cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK072125     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0221100 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 6,625,040 -  6,629,462  ( - );   4,423(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 6,625,040 -  6,628,173 ( - );   3,134 (bp)
Exon 2 Location 6,628,390 -  6,628,491 ( - );   102 (bp)
Exon 3 Location 6,628,588 -  6,628,923 ( - );   336 (bp)
Exon 4 Location 6,629,362 -  6,629,462 ( - );   101 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os01g0221100 Os01t0221100-01 208094 J013124I10 10566 LOC_Os01g12160.1 AK072125 16541 AP008207.2 255672756 BAF04344.1 113531961 NC_008394.4 297598437 NM_001048965.1 115435343 NP_001042430.1 115435344 Q5NAZ7 GH33_ORYSJ
Os01g0221100 Os01t0221100-01 208094 J013124I10 10566 LOC_Os01g12160.2 AK072125 16541 AP008207.2 255672756 BAF04344.1 113531961 NC_008394.4 297598437 NM_001048965.1 115435343 NP_001042430.1 115435344 Q5NAZ7 GH33_ORYSJ


Chromosome: 1 ,  position: 6,625,040 - 6,629,462 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tcctcctcgc cgtgctcctc acaccgcacc acaccacgtc tcctcctcca ttgctgcgcc 
000061 gcgccggcga cgacgcgacg acggtcacga cgcgctgaga ggtcaggccg gcgtgccttt 
000121 gtctgttccg ccgtcgtctc ttgctctgtt cttgggctgc ccgtgatctc tctctctctc 
000181 tctctctgtt cttctctctg aattctttgt gattggtttt gtgtctcctc tgcctctccc 
000241 tgtgctccga acaatctcct gaaaattaat ctcagcgcta gctgttgctg ttaatctcgc 
000301 tgctgctgtt gttgttgttt ttttttcttt tttggcttca gttcacgggc tgttttctgg 
000361 tgtcctgttc ctctttctct tcttcttctt cttcttccct ttgccgctct tcggtgtact 
000421 ttgtttctcc ccccaagaaa aaaaaacaaa aaaaagtttg tttcgttctt gtatttgtct 
000481 ccattactgc cgcttctgaa ttcaattttg tttttgtttt atgttggtcg atcgtgcagg 
000541 tttgttggtg gtggcggcga gatgttggag aagaaggcga cgaggagtac tagggtggat 
000601 ggggtgagcg gcgaggcggt gatcgaggag ttcgagcggg tgacgcgcga cgcggccaat 
000661 gtgcagcggg agacgctgcg gcggatcctc gccgagaacg gcggcgtcga gtacctccgg 
000721 gggctgggcc tcgccggcgc caccgacccg gccaccttcc gcgcgcgcgt cccgctcgcc 
000781 acccacgccg acctcgagcc ctacattgac cgcatcgccg acggcgacgc ctcccccgtc 
000841 ctcaccgcca agcccgccac ctccatctcc ctcaggtcag tgtccccgcc cgccgccgct 
000901 tgctgctctt tgacctcgat cgagaacgtc gctgaccatg gcggggatca cctcaccgcc 
000961 ggtgcatgca gctccggcac gacgcagggg aagcgcaagt acctgctatt caacgaggag 
001021 ctcgtcaagt ccacgatgca gatataccgg atctcctacg cgttccggaa caggtacgcc 
001081 atcgccgccg gcgagctcga tcgctgtctc tttcgccatc ctccccggcg tcgctgtccg 
001141 ccatggacag cctgcctctc tctctctctc tctccctttt tctttcatac gtacgacacg 
001201 tactaacaac acagtgctcg atctcgatcg atcgatcagt gacagtgagg tctcaattct 
001261 tggaaattaa tggcggtgaa attgatcagg gagtttccgg tggagaacgg gaaggcgctg 
001321 cagttcatct acagcagcag ggagacgagg acgaaggggg ggcttacggc gacgacggcg 
001381 acgacgaacg tgtaccggag cgaggagttc aaggcgacga tgagggacat ccagtcgcag 
001441 tgctgcagcc ccgacgaggt gatcttcggc ccggacttcg cgcagtcgct ctactgccac 
001501 ctcctcgccg gcctcctcgc cgccggcgac gtgcagatcg tgtccgccac cttcgcccac 
001561 agcgtcgtcc tcgcgttcca gacgttcgag cgcgcctggg aggacctctg cgccgacatc 
001621 cgccgcggcg aggtgtcgcc gtcgcgggtc acctcgccgg ccgtccgccg cgccatggcg 
001681 gcgctcctcg ccgcgcccaa cccgggcctc gccgacgagg tcgcccgcaa gtgcgccgcc 
001741 ctgagcaact ggtacggcgt catcccggcg ctgtggccca acgccaggta cgtgtacggc 
001801 atcatgacgg ggtccatgga gcactacgtc aagaagctcc gccactacgc cggcggcctg 
001861 ccgctcgtcg ccgccgagta cggcgcctcc gaggggtggg tcggcgccaa cgtcgagccc 
001921 gggacgccgc cggagcgcgc caccttcacc gtgctccccg acatcgccta cttcgagttc 
001981 atccccctca agcccgtcgc cggcgacggc ggctacgccg aggcggagcc cgtcggcctc 
002041 acggaggtcg ccgccggcga gctctacgag gtcgtcatga ccaccttcgc aggtaacaca 
002101 cgttcgtcct catcatgcat gacgttggtt gcttattact acttgcagtc caaaaaatgg 
002161 atgaatatct gtcgcttttg catatctgtt catgaaacca gtcgaaattt ggtcacttgc 
002221 acatttgcag ctactggcca tataatgttt gcccaaaaat aattgtcctt ctttttatga 
002281 cactacaaac attagcattt ttgggaccac atgtgtaccg aacatgtttg ggaaaatcct 
002341 agggtggcaa tttgtttttt tggtaaatat tgcaacagat atgcatgaaa cgaggactaa 
002401 gaatggtttt attaattatc cgagtaaata taagcaacaa tggagcagtt ccatttgctt 
002461 tgcagtataa attaaaaagg caaaaaaaat aaatcagtga cagatcaaag ttgttctgta 
002521 caaatgctag aaacaactaa aagttgtata caatttcttc agataaacag ctttacattc 
002581 tgtagacaga gacatgcttc accacatcat ttagtgtaat ataattagct tatgacagtt 
002641 tacctgcacc tgttgcatgc ccgttgcttt cttatccgta actggagagg caggtttgca 
002701 aacacacagt cattagcagc ctctgctttg tcctgacagc aatgcatatc ggtggtcaca 
002761 gtgacagcac agagaacttt cgcctcattg ctttttttcc cctttgttga cttgtttttt 
002821 cccctttgtt gacttgagct ctgacagtct gattgtccaa aggtggggca ttgacttcat 
002881 ttggccttcc aaacccttgg gctaaatggt cactctggtc ttgaaaactt ggatcttttt 
002941 ttattttttg ttgtcaaaga attgtattgt agatgtgcct ttctgtttgg tagatttaaa 
003001 ggaccatgac caatgggaaa acttcaggag atctgaagtt gccattgcct tttctgtttg 
003061 gttgtctgta gattagtttt agacttttag tctttggttc ggaagatgat taggtcatca 
003121 aacaactatt aaagataaga ttttgaccct ggctcaggca ctggttggtt gaggactttt 
003181 gagttgcttg gagacaaggg tatgaacata ccttggagat gtagggattt ggatgaatta 
003241 attaattaac ccaagtggcc cttcacttgc ataattttct caaacatatt atgtgtgtgc 
003301 acacctgact gaagatcaat gaaaactagc caatggaatg gacaaaacat tgaaaaaaag 
003361 aagctaattt gctatgatag gttaattctt ttatacatgt agatcaataa ttgctgtgtt 
003421 gctttcacaa ggtaacttgt actgaacact tatctgaaac ttacagagtt actcctacac 
003481 catcagcctt agttccgact ctgttgaatg cttcaaatca agtccaagga cgactcattc 
003541 aattcatcct gataaaacaa aacatcttaa ttattcatat gactttgaga actaatagta 
003601 cttgtacgac tcctaccacc tcttctagta gctttaattt acaaatggga gcaatgatga 
003661 tagttgtaga ccatggatca ggtgtgaaac tgacagacca aaattaaaca atcccttcga 
003721 aacagaaaaa gacctcctaa tgacgatctg tcctatgacc tttggtacgt ttgctcttgt 
003781 ctcttatcag cagctcggaa tccgtactca actctcccca gccttaaccg tagttaacct 
003841 tgaccattag ccaagtctca tgcattcaca tccaaatgca acagctgcaa ctatcaaacg 
003901 aacgaatgaa caaacaaaca aacactaaca ctggccaggc catctctttc tggtagtaca 
003961 ttccagtatc tgaatattca ggcttaattt tcttacctct tcaccaacaa ggtaattgat 
004021 cagctcagcg ttttcacccc attaattttt cattattcaa attgatagct tattagctag 
004081 ggtttgtcgt cgcgtttaga ctcatgactt ccatggatgg ctgtatgggc gccacaaacg 
004141 aaagaggaga cgacgacgaa gaattcttct gtggtcatgt caggtaatcg gataagaatc 
004201 ggtgacaggc tacccggcac agcccaagtg ggaagcaggt acatatgcaa gaacatgtac 
004261 aagctcagct cagctaccta gctagagcag agatgggggc caatctatta tgtctagtat 
004321 acttttcttc ttccttggca tgattgattt aattatgttt atatatatgc atgctaccct 
004381 acgtaccatc ttaatcatat gatgtttgaa gcttagctac ctt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
BY836563 baet102e07 439 view details
/rice/oryzabase