cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK120316     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0280200 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 11,752,678 -  11,754,728  ( - );   2,051(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 11,752,678 -  11,752,966 ( - );   289 (bp)
Exon 2 Location 11,753,312 -  11,753,437 ( - );   126 (bp)
Exon 3 Location 11,754,472 -  11,754,728 ( - );   257 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 UniProt
Accession No		 UniProt Entry
Name
Os05g0280200 Os05t0280200-01 215035 J013055N09 20551 LOC_Os05g20050.1 AK120316 12606 Q40723 RLGP2_ORYSJ
Os05g0280200 Os05t0280200-01 215035 J013055N09 20551 LOC_Os05g20050.2 AK120316 12606 Q40723 RLGP2_ORYSJ
Os05g0280200 Os05t0280200-01 215035 J013055N09 20551 LOC_Os05g20050.3 AK120316 12606 Q40723 RLGP2_ORYSJ


Chromosome: 5 ,  position: 11,752,678 - 11,754,728 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acgttccctt tccctttcct agtcttcttc tccgccactc catcggcaag gaggaagatc 
000061 tcggaggcgg tgcccggagg aggtgaggcg agatgggcgg gcgggtggat cacgagtact 
000121 cgtacctgtt caagatggtg ctgatcggcg acagcggcgt cggcaagtct aatatcctct 
000181 cccgcttcac ccgcaaccac ttctccctcg actccaagtc caccatcggc gtcgagttcg 
000241 ccaccaaatc cctgcaggtc accgcccgct gcattccttc tccccctctc ttcccttcga 
000301 ttatattttg caaatgttcc tacgcgcgcg ctcgtctttc ctacattgga tggtccctgc 
000361 tagtcgtcgt gccgatccca aaccaccaga tcttggcctt ctgatctgga tgggcgaacg 
000421 atcccgccat gattgcgtcc ccccaatgac agctgctcgc ctgacgagtt ctttcttgtg 
000481 gatggaaggc tctcactttc gactagttgg atcatctgcg tgtctcaaaa agattattga 
000541 tgaaccatct gttcaaatgt tgcaaatgca ttgttcaatt catttccttg tcttgccaat 
000601 caggtagtgg tcacactagt cgttcacttg atttactgtg acatcacccg tccttcaagt 
000661 tacttacagt ttttgtgaat gctatattcg cttcttttta aaaaaaaaat ggatcacatt 
000721 attggttgga tgatggagtg attgatagga tgatatgcca gctacttcct ctggtatcta 
000781 tgtgctatcc cgtctgtcct tgagtgttag gtgaagcaag actgtcatat gttaagattt 
000841 cccttgtcat ctgtgccagc ttttcttttc cgcttttctc gtcacactaa ttcctcgatc 
000901 tcattaatat tttggcatga tgacattgta ttcaatattt tattgttcta ttgaaaagcc 
000961 acttttgtgg ttgaacagga cagacagcta ctataccaag ggcctgttca ctttgatgct 
001021 aaaaaaaacc ttaccaaatt ttggcatagc aaagttatca aaattttggt aacttgcatt 
001081 ttttatatag ttatcaaaat ttagtagtaa actaaatgta accacttttt tggtaacttt 
001141 accaaaattt ggtaaggttg aaaatggcat caaaatgaac aggcccaagc ccaagtactg 
001201 cgtcagggac ttactaagtc tgtatgatca tgcatttatt agtccagcca gctattcttt 
001261 ggtatcttat tgtaattagc cttgttagca gatggagggc aaaacaataa aggctcagat 
001321 ctgggacaca gcaggacagg agagatatcg tgccatcaca agtgcttact accgtggcgc 
001381 tgttggggct ctccttgttt acgacatcac aaagaggcag agcttcgaca atgtccacag 
001441 gtggcttcgt gagctccgcg accatgccga ctcgagcatt gttatcatga tggtcggtaa 
001501 taagtctgat ttgattcatc taagggctgt ctccgaggat gaaggtaagg cattggctga 
001561 aaaggagggg ctgttttttc ttgagacatc agctatggag gccgtgaatg tggaggaagc 
001621 ctttcagact atcatcacag aggtctatgg cattgttaac aggaaagcac tggccgccaa 
001681 agaagcagct gctgcttctg ctccgctgcc ttcccagggt aaaactatca gcattgacag 
001741 cgctgcagga aacacaaaga gggcatgctg ctctgcttga tatgtacaat ggagcgttca 
001801 acatcatatt gtagagagcc aggtgtgaga ttcgcgggta gactcggagc atagtgatct 
001861 taaatggttt ggaggcaagt cctacttttt ttttttcagt tgcgtgaaca ttccagagtg 
001921 cctagctgca gttgcagttt gttcagtgtt tcctaatcaa aagttagatg tgtgtattag 
001981 gattcattcc atttccgttc tgattataca acgcaaacta tagctgcaat atatctcaga 
002041 ttatacaatt c

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV915609 bags15e20 622
more... (Total Hit Count: 9 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ682251 whok7j21 859
more... (Total Hit Count: 78 )
/rice/oryzabase