cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK112031     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0516600 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 25,717,565 -  25,720,290  ( + ) ;   2,726(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 25,717,565 -  25,717,745 ( + ) ;   181 (bp)
Exon 2 Location 25,717,848 -  25,717,874 ( + ) ;   27 (bp)
Exon 3 Location 25,718,003 -  25,718,102 ( + ) ;   100 (bp)
Exon 4 Location 25,719,064 -  25,719,210 ( + ) ;   147 (bp)
Exon 5 Location 25,719,281 -  25,719,361 ( + ) ;   81 (bp)
Exon 6 Location 25,719,469 -  25,719,614 ( + ) ;   146 (bp)
Exon 7 Location 25,719,928 -  25,720,290 ( + ) ;   363 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0516600 Os05t0516600-01 104609 001040A09 9429 LOC_Os05g44050.1 AK112031 26243 AP008211.2 255675924 BAF17960.1 113579597 NC_008398.2 297605017 NM_001062581.1 115464892 NP_001056046.1 115464893


Chromosome: 5 ,  position: 25,717,565 - 25,720,290 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aagcaaagca aacgcgacag cttcgcctcg tctctccccc ccgagtcccc aacccctcct 
000061 cctcctcctc ttccccttcc ccgcgccgcg gcgagatcgc tccccccggg ggcagcagct 
000121 agatcccgat ggcttcgcgc cgccgcaccc tcctcaaggt catcatcctc ggcgacagcg 
000181 ggtgagcgat tcggatctcc cccccacctc cccatctcag tccgcggccg tttttttttc 
000241 ttgggcttcg gtttatcgct gacttggttt cgttgcgatc tagggttggg aagacgtccc 
000301 tgatgaacca gtatccttcg attcggatag gggatggcgg atgatatagc ccgcgtcgtt 
000361 tcacgaacac gggcgggttt ttttttcttc ttcgatttat ttgggggttt tgttttcttg 
000421 agctgtgatt taattcagat atgtgaacaa gaagttcagc aaccagtaca aggctacgat 
000481 tggcgcggat ttcctcacca aggaggttca gttcgaggat aggctcttca ctttgcaagt 
000541 aagatatttc ttttcccccg cactggttct tctcctcatc gcgccgagat taattaggtc 
000601 cgttcatggg aagcgaattt gtatgagctt gattagttac ttaactgctc cactccgagc 
000661 tcaatgtaga gaagatgttt ctagctgttt acttctgaaa tgtttgtttg tacatgcatc 
000721 attgacttga agtttgcacg actgattgag tctcaatatg gtctataact ctaaactcta 
000781 cggttttggt ttatttagat gttgtgattt aaattttcaa gatcgaattg cgtggcatta 
000841 attgattgaa caatgagcag gcaccttttc cattaatttc gtggtttcat ggattgattg 
000901 aagtacttga atttagtctt ttttgcttat gtaaattggt attttggctg gaaacaatgt 
000961 acaaccagtt attttgcatg atggaaataa tggcaggaaa agttattgtc attttaagaa 
001021 tttattcact ttatgctttg tcagagaata gaaatcaagt gccagcctag ttcctacttt 
001081 cttctgtccg atactttgca aggttataaa aagtacttcc gttatgtctt ttggaattac 
001141 cacacatgtt tttgtgcccc aagcctgctc tttaccaatc ctaaagctct tgctcctgct 
001201 taagtaacaa actacatcat tttcagatta gttctgcgta ttctaatgga ctaaacatct 
001261 cttctaggta cctactgcat gtttatgttg cttcttatct ctatttagag catgtctatt 
001321 gtatgcataa gaaatctatt tgtcaagttt ttctgatttc acattctgtt ttatttgaag 
001381 tctatgcatg ccccagtctg atgtgttaga tgtacggctg tcatgcatac aaataaattg 
001441 ggaggatcac catctcttat ttgctggttt attttgctga accgtgtatt ttgttgcaga 
001501 tatgggatac tgctggccag gaaaggtttc agagtcttgg tgttgcattc taccgtggag 
001561 cagattgctg tgttctagtt tatgatgtca attctatgaa gtcatttgat aatcttaaca 
001621 actggcgtga agaatttcta attcaggtaa tgtgttttct ataattagtc atgaatcatg 
001681 tcatttctgt ctcactttgg atgtttgact ttacaggcaa gcccatcaga ccctgataac 
001741 ttcccttttg ttcttttggg caacaaagtt gatgtagacg gtggcaacag ccgtgtggta 
001801 attatcgttc cttcttcagc tttctaacag aagttccttt taatcagatt ccatatcttc 
001861 tctcggtggc tgatatggat acgccaaact ggataatatt ttaggtctct gagaagaagg 
001921 caaaggcatg gtgtgcctct aaagggaata tcccatactt tgagacatct gccaaggatg 
001981 gtacaaacgt ggaggaggct ttccagtgca ttgtaaagaa tgctctgaag aatgaaccag 
002041 aggaagaact gtaagcacac tctctcctta ctctctttga tcttttgtaa agatttaaca 
002101 acctttattg caattggtgg ttgatcattt gatctacctg aaagtgcaat agttctttca 
002161 gttggccatt gcttcaatca ttatgtacat taaatagtca atagcgagtt gcttttgttt 
002221 tttagacaca atgcactgtt tctgtttcat ggtaccgtct tctctttgca tggtcatggg 
002281 actggcttag catcaccaca catctacatt tggttatatt tctgccggtt tttgtttttt 
002341 gatatcacga aatgctcttg aaggtatgtg ccggacaccg tggatgtggt gggtggcaac 
002401 cgggcccaaa gatcatcagg ctgctgctag aacatgatgg accatgaggg ctgagactgt 
002461 tggctatgcg gtaacagaac tacctttgga cattgctgtg cctccatggt gactctcaag 
002521 gacccattcg taaccttttc aatcacctca tgtacccagt taagattgat gcgtctggcc 
002581 tgagttgtca aatttgtgga tgttgtgcag tttatcagta gcgtcatatc tttgtgaata 
002641 caatcggtga aataagtcga gtgtaaactg aagtttctcc attatggttc tctctgaaac 
002701 gaacaagatg aatttgtttt gtctgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK249465 FLbaf35i09 1058
more... (Total Hit Count: 22 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ572913 rwhok17j18 873
more... (Total Hit Count: 234 )
/rice/oryzabase