cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK112003     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0182500 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 4,958,349 -  4,964,952  ( + ) ;   6,604(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,958,349 -  4,958,560 ( + ) ;   212 (bp)
Exon 2 Location 4,959,379 -  4,959,510 ( + ) ;   132 (bp)
Exon 3 Location 4,959,602 -  4,959,627 ( + ) ;   26 (bp)
Exon 4 Location 4,961,614 -  4,961,703 ( + ) ;   90 (bp)
Exon 5 Location 4,963,669 -  4,963,757 ( + ) ;   89 (bp)
Exon 6 Location 4,964,556 -  4,964,952 ( + ) ;   397 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os05g0182500 Os05t0182500-02 103249 001035F01 1394 LOC_Os05g08960.1 AK112003 21615 AP008211.2 255675924 BAF16733.1 113578370 NC_008398.2 297605017 NM_001061354.1 115462438 NP_001054819.1 115462439
Os05g0182500 Os05t0182500-02 103249 001035F01 1394 LOC_Os05g08960.2 AK112003 21615 AP008211.2 255675924 BAF16733.1 113578370 NC_008398.2 297605017 NM_001061354.1 115462438 NP_001054819.1 115462439


Chromosome: 5 ,  position: 4,958,349 - 4,964,952 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 ctactcgcta tcctccttcc tccatgattc ccttctcgaa tcttctcact ttcttctgaa 
000061 gtgctccgct ccgctccgct ccgatccaat ccactccgcc cgagtccccc acccatcggc 
000121 acccaccagc gcgagggtgg gtggccatcg atcgatcggc ccatcgccga ttcccgcggg 
000181 atctgcggcg gcgcgggggg atttgatcgg aggtgagaac cattcgccgt cctggttgtg 
000241 tatggttcct cgcgattgtt ccctcgcaga ccgtgaaatt ggtcgtcgtc cgtggaggat 
000301 ctgtgcgcat atgaccgttt gtgtctagtt gaattcacag tttgtggtga tttgtttcgg 
000361 tgatgaggat ttgggggtgg tggtaggctt tatttcatgt ttgttggggg tgattggttg 
000421 gggggaggat gagggttgcg gagggtatgg gcgattgatt ggtggagttg ttgcgcttgt 
000481 cttcgttggg ggaaatttat gggtccagat ttgcagtagt ataatggcct tgttgggttc 
000541 atcggatgac ctcggtctgt taatctaagc atgggaaata gggatggaat ggtgtgcttg 
000601 tcatgtttat gtttcgcctt ttcgtttcat ggagattttt tctcgtgatc acaggatgta 
000661 tgggttgttt ggaagggaat tcctgtacct atttgtgctc agagcctcag atgcaactct 
000721 tgtgcatgtg ggattctcca agactccagt tactggctgt ccaaacttag tcgagaacag 
000781 gacaaacgga aaatatgaaa attctcatat gttacttttg caacatccat aaaaaaattg 
000841 tatacccaaa gcaatttttt cttctgaaat tacaggctac ttcaacacta ttactagcat 
000901 agtgatgaac tgccttgatt gttagtatgg attggtctgg ctagtaggtg tcatgggtaa 
000961 actaaagaat ctcagtgtag gtttcccatt ccttctattt agcttatttg gtgacttggt 
001021 atctacacag ggtgaatatg tcgacgccag caaggaagag gttgatgagg gatttcaaac 
001081 gactgatgca ggatcctcca gctggcataa gtggggcccc acaggacaac aatataatgc 
001141 tttggaatgc tgtaattttt gggtaaggtg ttagacttaa gagatatgtt ttattccttt 
001201 cggttttatt ttgatccatt atacttagtt gtcaattatg tcttgttttg cagccctgat 
001261 gatactcctt gggatggagg taaggaattt aaagtctttc cttttatttg gggtttgcat 
001321 ttgggacttg ggagagtaat cacaggcatg atatggggaa atttaactat tttccacttt 
001381 tagttttggc aattaaccaa atacccttct tagatttgca cttaagaatt tgccactgga 
001441 gagagaagct tttgtaattt tttgccactt tctgcactgt tcagtgccac atatacatgc 
001501 cagcatggac caggcacacg aaatgactaa tctacccttg ttagtaatgt ctgtaatata 
001561 agctgagtca ggaataatat ttggacaaat tgctttcgcg aatcagttgc atcggtatgg 
001621 atgctgttca cttttatgag gtactatatt aaagaccgag tacctccaca tcagttaaca 
001681 aatcaatatt tgaaggaata gatccactga gatggttata acaaactttc aaaacgatac 
001741 ttagattgag ttcttttgtt cactttcaca acttatctct ctcgtttttc atgtgtacgt 
001801 ttttcaagct gctaaacggt attccaattt ggctggtatt gttgggatgg tgccacctgg 
001861 agtgagctcg attaaggtgt acgatagcat ggtttggaaa tatttctctc ttcacgtaaa 
001921 actgagcaaa gaattagcgc atgactaatt tagtttgagt tttaagaaat aaagaataga 
001981 ttaatatata tttttaaagt aacttaattt tatttaaaaa gttattaaag aaacgtgcga 
002041 aaaaaaatga gggagtagaa ctcagactgg cggaggccct ggttccggtt tttttcagtc 
002101 caaccgccgg tccggtcggt cctaataact gtgagtagaa gttagaaaaa agacatccga 
002161 atgcagcctc agaaagttaa tgaactgact gtaacatgaa tggtgccatt gatgttgttg 
002221 ccttataaat ttaaaagggt aaaatgggaa gattgggcag gttgctggtt tctcttggta 
002281 tctttccagt gaatgaatta tgactaagat tcaatgcgga caggcttagc aactgagaaa 
002341 cttaccacta gctagaaggg gtaggttggt catttttcac gttggtccat gttggcatgc 
002401 acatgtggca ctccacaggg caaaaagtgg caaaaagtta caaaagcttc tctctctaat 
002461 ggcaaattct taagtacaat cttaagaagg gtatttggtt aattgtcaaa tgtaaaagtg 
002521 gcaaatagtt aaattccccc atgatatgac gcatatcttg tacttcattt tacttctgtt 
002581 ttcatattca gagatagttt tgcttgcata attccatttt tgttgttgat ataacaattg 
002641 gttcatttaa ttaataggca cttaactttc tggacaaatg atacaattta taattatcaa 
002701 acaaatagaa tgtatgaacc tcattttttc tgtcagttca acccacattt ctactgtctt 
002761 tgggatttta tgtctcggaa tgtatattct acactttaga cacttttctt tttgtctaca 
002821 atggtccagc cttggagcat gtagttcaaa cattttaggt taattttaat taaaacttgt 
002881 aattttcttg tctaatcgag tgaagcatgt gttttttttg gggtgacatg gtttggagat 
002941 cttattttga ttaatgtttt gaattcaaat atatgatagt ctaaatcgtc aataaacatt 
003001 tgttaaaacc ttttcatcat tagctgatca tgttttattg gttctatgac tgagaaagtg 
003061 cttgtttttt ttaaagagcc tctgtacaac ataaataagg tgattaaccc gttttaaaca 
003121 gtctgttggg gaagtcctct ttgccaaacg tccatttgat atttttcctt tttgtattta 
003181 ttggcatttt gttcttgtac gtgtcaccaa ttgtactctt ttacatgtta acactgtcaa 
003241 attatgttta cttcgccatc gccaggtacg ttcaagctga cacttcagtt tactgaagat 
003301 tatcctaaca agccacctac agtgcgattt gtttctcgga tgtttcatcc taacagtaag 
003361 cctctctccc tgctgtttaa tacttgcctg tggcatggtt cctgtttctt acaagttata 
003421 agtatttatg tggcatttcg gaacaatagt ctaacatccc gagagacgta caattaagaa 
003481 ccaggctaaa ataagatatg agaactagtg agacaattga gctgaatctg gatggctcat 
003541 gtcaaggcca aatgctacag gaaacctatg acagttccac ctccaccttc tagtgacgtt 
003601 ggcagtcctt tattctacat cgttgaaaag ctgacctagg taatttctaa atgtatcaaa 
003661 caagaatcag ccaaaaaata ggatccagaa ctagcgatct tattcatgga ttggatctag 
003721 atgcagcata gaaggccacc ctgattctcc ttgcttccat gccatccaaa attattttgg 
003781 tcactgagat caatgttcta gttatcccat tttagtttct ttttctatct aatgcagaag 
003841 ttggttgtta aggcggtaag gcatcctaag gcgaccccgg actgccttat cgccatagcg 
003901 gtaaggcgta aggcgaggcg acgccttagg cactccatac caattagatg acaaacaaaa 
003961 taatctaata tgatagcaaa tcaaagcttg gcaactcttg agcccactag atggttgtaa 
004021 taattactta accagatatc aatttattaa ctaaaagaac accatcctat aaatacagag 
004081 tgagggtgca tgggggaaga gcaaacgggg taaatatgtg ctaagtacta actactaaca 
004141 gggagtcagg gatgtaagcg aggggcaggg agtaaaacag agcagtagag ggaggattat 
004201 agtagatgag atgtagagga gagggaggaa aaccacaaca tagcagcaaa tgagggagca 
004261 gagtagagga tgtagaagag gggggaggaa acaccaaaac aagcagcaga ggaaggataa 
004321 gaacagggta gaggaaggag caaagcagga tcatgtagag cagagaaaga aacagaggaa 
004381 agaagagggt ggaggaaaga ggagaaagaa gagcgtgcct gcttagtttt tgtgtcaatg 
004441 gtgaggacca ggatgatggc gcaggtgcag aggaccagga cgatggcgca ggtgcagagg 
004501 accaggacaa tggtgcaggc acaggatagc cgcaggcaac aacttggatc gccgccaggg 
004561 atggagatgt cgcgagggat ggatcgccac agcctcagac tccagcgacc ctctttctgt 
004621 tgttttctcc ttgatttggt gggatatggt gcgtggggac cttttcaccc caaaaattgg 
004681 cgcttctgtt agttctgttt cacgcccagg gcccatggcg ccaatttttt cgggctcttc 
004741 aaccaatcgc ggcaaaaacc acgccctcga cttcctgtgg cgttgccttt agccattgta 
004801 gcgcctaagg acgcaatatc gacgccgtag cggcgccttg ggcataaggc ggacgccata 
004861 agcaatatgg taaggcgggc cagacgccct gactcctggc agcgccttac cgctatagcg 
004921 acgctatggc gatgccttga caaccagcag aacattgaat aaggtatcaa atatccaatt 
004981 gttgcaatta tgctgttatg ggcctcatcg caggcagtta agagtatact agcaaatacg 
005041 cagatccaat tagtacttgt ttgatttgat gactagcttt gctctcgaat gtcataattg 
005101 atgactagta taagtttact tgcatcaaga tataaaggac tttacagata tgcagtatat 
005161 ctgaagctta tttaatgctt catacaattt atgtaaatac ttaaaaagat cgacttcttt 
005221 tgctacttgt gtggaagcac ttatgtacct tagaatagca tgatattgtt gtatctccat 
005281 ttgttttact ttcctaacat tttcctttta tcatgtacag tttatgctga tgggagcata 
005341 tgcttagata tactacaaaa ccagtggagc cccatatatg atgtagctgc tatactcaca 
005401 tccatccagg tagatgatgc cttttttggg ggtattagca tgtcatgatg tcctgtcatg 
005461 tttgttgcaa tattttgtat catgtttata attcgtgctt ctgattttgg tcctgtcttt 
005521 aaaaatattg agcaaactca ccaatctagt ataagtgaat tgtcactaac ttaattgttg 
005581 tcgccttaaa atacacatgg tgtttcctta tagatagtct gcttttcctc cccacatgct 
005641 ccattgttaa gtagtaagct atattcactt gaataattat ttttctttgt tagaggcact 
005701 atcacgcgat atacctgtgg aagggtttca tcttgagagt agagatatta ggcctctgtg 
005761 actgattatc actattcagt attaagtgac attggcacgt ggggtatata tacataaaaa 
005821 agaataatat ttccagcctc tgcttagttt ttgattctgg tgacaactat atataggcca 
005881 cgaagagtag acggctaact tctatatgta ggcaaacttc tataacagta actttagtgt 
005941 ggtgaggccg cctgtcaata acaacatatt atctttatat gtttttcata tacatggtga 
006001 tatttattaa tctatgctct atggaaaata gtatagaaca caataatttt tatatcagtt 
006061 gggatacttg catatcttgc ttctgtgaat aacaaatgca tatcacaaca atgcatattt 
006121 catggactca agacattgac atattacagg caatttcatt gatttaactg ttcagtactt 
006181 ctatttcctg ctttgtatta tttccagtcg ctgctttgcg atccaaaccc aaattcacct 
006241 gccaactctg aagctgcccg cctattcagt gagaacaagc gggaatacaa ccgaaaagtt 
006301 cgtgagatag tggagcagag ctggaccgcg gactgatcca ctccatctaa ccatatgatg 
006361 cctgatactt aaaacgctca tcttttcagt gtgtcgtgta ccaaactgct tgtaattaaa 
006421 atgctaaaac agtaaaacgt gcttactgtt atgtatgccc ttcccgaata cgaggaaggc 
006481 tttggaccat gttgaggacc atatggactt cttatataac atctattgtt gccagctact 
006541 aagtgttaaa tgctatattg agtacgaagc cgtgcctaaa attcaatgag taattctttt 
006601 cgcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV924075 basd11d19 672
more... (Total Hit Count: 39 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ210691 wh29d11 564
more... (Total Hit Count: 328 )
/rice/oryzabase