cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK111857     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0460200 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 22,712,916 -  22,717,315  ( + ) ;   4,400(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 22,712,916 -  22,713,075 ( + ) ;   160 (bp)
Exon 2 Location 22,713,199 -  22,713,301 ( + ) ;   103 (bp)
Exon 3 Location 22,715,416 -  22,715,513 ( + ) ;   98 (bp)
Exon 4 Location 22,715,585 -  22,715,685 ( + ) ;   101 (bp)
Exon 5 Location 22,716,207 -  22,716,284 ( + ) ;   78 (bp)
Exon 6 Location 22,716,733 -  22,717,315 ( + ) ;   583 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0460200 Os05t0460200-01 209260 J033021F14 193 LOC_Os05g38550.1 AK111857 8879 AP008211.2 255675924 BAF17669.1 113579306 NC_008398.2 297605017 NM_001062290.1 115464310 NP_001055755.1 115464311
Os05g0460200 Os05t0460200-01 209260 J033021F14 193 LOC_Os05g38550.2 AK111857 8879 AP008211.2 255675924 BAF17669.1 113579306 NC_008398.2 297605017 NM_001062290.1 115464310 NP_001055755.1 115464311


Chromosome: 5 ,  position: 22,712,916 - 22,717,315 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcgaactctc cacgcctcca caaataaagc tcgtcccgag gaagggcggc gacccacccc 
000061 ccccaatcgc caaaacccta actccgatcc gatcgagctc tgcttcccat ggcgactgcc 
000121 gcgagccagg cgagcctcct gctccagaag cagctcaaag gtacggatcg gaacggcccc 
000181 ccgtgcaatc ttatctcgtc taatctccta tttttttttt tggtcccgat tcgtcggcga 
000241 tcggttcttg atcttggccc gcctttttgc gggatcgttg cagatctcgc gaagaacccc 
000301 gtggatgggt tctcggcggg gcttgtggac gatagcaacg tgttcgagtg gcaggtcacc 
000361 atcatcggcc cgcccgatac cctgtagtaa gttcaattcc cacacccccc ctctaatcgc 
000421 tgcgcgattg ctggtttgta gatcgattgg tttacgccta ttcgtcgccg tgttttgatt 
000481 atgtttgttt tgcgtttaca ccatggcaat tccacctggt agatattgat gtacagtgct 
000541 tatgaattgt tgtgaaaact gtctgaattc catattgccg tgttgatctg gagggtgtag 
000601 ctcaacgaat ttgcattacc tatgtatctc ggtgttgata tatggaattg cctgttcagt 
000661 tatgcgcctt ggagacatgc acgaagcctt tctgtgtttg tggttctaca attgataata 
000721 agatatatta gttataggga gctgagactt gggagtaagg tagaggccag tatcttgttt 
000781 caatattcaa cggggataaa aaagggctga attggattaa tagctccttt taagtatgtg 
000841 ggtattgctg gatcgataga aacaattggt ttagtggatg tacaagattt gtaggatggg 
000901 gagcttcata ttcatctgag ttcatatcca tcatgttcct gtctggaaag tttgacgcac 
000961 gtttaaatgc caactatccc taccccttct tttagtgggg attatatttt gccctggcaa 
001021 atgtacacgc acaacttgat ttaataaaac aggtgaacgt agtataacca gctgttttca 
001081 tgatactggt ttgcttggtt ttggattgat acacaattat tttagcgttc atatgaggtg 
001141 accttaatcg attaataact gggtgcgcct atcatatagc tagatcatct ggcatatcga 
001201 ttatttacct taatcaatta ataactgggt gaccttaacc ttaatcaatt aatattgcta 
001261 gatcatctgg catatggtta aagtgacaat gatttaaata atacacttgg ttaatattgg 
001321 agttacatgc attttgtgat atggtttgat ggaaattctt aagaatcatt tggctgctat 
001381 tttgcattgg aaaagggaag agaaacacat tttgacctca aatctgccgg cactcaacaa 
001441 gggttcaccg gaaacctata ttccaaagca gtgtattacg tataccatgt tatctaagta 
001501 tatatttcct gtttttctta tctactagaa cgagatcttc cttttgacac tctggttttt 
001561 ggtaacagat tagtattgct taagtattac agatacgggg tatctatggc agtcatgtca 
001621 tgtgacatgc tgcaaacaag tagcaacaaa agatccataa tgcaaatgaa aaaaaaaatg 
001681 ataggatgaa gcatatgggt ctgtttggtc catcaatttg tcttccaata ttagattatt 
001741 gtccttttta gctcacccaa taaaacggca gtgtgctttt ttggcctagt cccttctctt 
001801 gtaatccatt gtgcatacaa tagcaccagt tctgttcttc ctatcaagtt cctctgctcc 
001861 tcttgatttc tcttcccctc tctccaacgt tgacaactca acaccccatc tgcttttcac 
001921 catcatgccc tcgttcctca gttggaatga ggaattgtgg caaactcatt gcctccttcc 
001981 tctgttgatg ctcttcctgt gatgcggaag agccactggc agcagtcaca tccatggagg 
002041 tcaagcggct gatgaagcat agaaagcgca cagaccatat catatgcgca ctacctcatg 
002101 ccaatgccat atagctcaat ttttctattt gttttaatgc taaatgctac attgtgtttc 
002161 cagtacaccg tattgtggtg tatcgcctta tcacatacag gaatggcact tagctgttgt 
002221 atcgggtgat tcctagagta tcattgagtc attctcaatc tgtgccagta ctgttaatag 
002281 cttctagtga ttaagctgtg cctcttgatt tgctttctgt acatttatct gtcgattgat 
002341 ttgactatta tctgtgtttc ttctgtgctt aagtgattgt acatttttaa aacttctttg 
002401 ttcttacttt aaaagcttaa tttttttgct ttaaaccaat atctttatat atttcactgg 
002461 accttggtaa gatttaatgt gtgaacttct gtttctgcag tgatggaggc tacttcaatg 
002521 caataatgac cttcccccag aattatccga atagtccccc atcagtaagg tttacctctg 
002581 agatgtggca tccaaatggt aagcttgcta ttgatctatg attttgctat atcaattttc 
002641 taacagggtt tataatgttc aattcttagt ttatcctgat gggcgcgtat gcatttctat 
002701 ccttcatcca cctggcgaag atcccaacgg ttatgagctt gcgagcgaac ggtggacacc 
002761 tgtgcataca gtaggttctt ttttacaatg catacaagtg tttttctctc tttgttcgtt 
002821 ggcacaggtg ttttgtccaa cattcttata gactcttcaa ttcggtataa acatgcatca 
002881 cagcaaatct gtatcaagtg tctgttccac tagctaatag ttgcgaagcc caaagtcttc 
002941 tctgatctga agatgccctg gaatgtaaaa cattttatga tgctagcatg tttctacatt 
003001 ttcttgttct aatcacctaa acttattgga tatataatcc caatctttca aaacagattt 
003061 ttgctgacta gaaatctatc aatctcagat agttatgaac atccatcctg tgatttcttt 
003121 aagtagcagt aatatatgaa ttttatggtt aggaatatga ttccacgtat tgcttgtcca 
003181 aaataaccta aaattcattt tggaggcttg gcgcgcactt atcagtgtta atttggaaga 
003241 tttgtggtca attattttct tgctaaatta ttttgtgctt gtaacttgca ggttgaaagt 
003301 atagttctga gcatcatttc gatgctctct agtccaaatg atgagtctcc agcaaatatt 
003361 gaagcggctg taagtgcact cgttgtctat ctgcaattct cttgcccttt cttacgtgct 
003421 gcattaagtc tagacttaca agaggaacgg aaaattattc tgctgctcca atgcaatgtt 
003481 gtaaatgtat ttatcttatt tacagatttc aatttcacta atagatgagt gagatatctt 
003541 gattgtatgt tgcatcctaa aataaaaacc gcaatttgag tctctctgtt gaacatggat 
003601 gggggtttct ctctgtgttg atctcatcgc agttagcaga gtaattgccc gttgacatcc 
003661 acaaaacatg tgtgccactg aaggtcttga tagtcattca atttgatttg tgccatgtct 
003721 agaagtttct agtacttcat tccttcactg caaaaacgta tattctgttt ctattacttt 
003781 ctgaacgtgt gctttgaaat ttgtggtgct ggtgcagaag gattggagag aaaagaggga 
003841 cgatttcaag aaaaaggtta gacgcattgt tcgtaaatca caggaaatgc tctgaaagat 
003901 aaggagcaca agggggagta agcgagtgct acaacaggtg cactacactt aactgtctgt 
003961 cgtcaaacga ctacctaaag atagcatttt tgcttcttcc cctgtatatt tccccctcag 
004021 tgtcattcga gtggtgatgt tggtcttgtc tccgagatgc tcggaaatgt tgcctattct 
004081 agaaatttcg attgtattgt gtggcatgga gtgtcaacgt tgaggaatat tttggaatgc 
004141 tgccaattag tcataattgt cgtaatgaac ttttcataac agaaaaccta gtttcacata 
004201 tctgttggct tactgcagca gcccggaatg ccatctcgtt gtgagtatat aactctgatt 
004261 tgtttgagta ttgtttatgg ccgcaaaagg atggttttag gcttgtagca tgtctactct 
004321 gactttcata ttcttcctgt acctgtacgt tgccaatcat atggaaatca actggcagca 
004381 atctggttat cttttcagcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ547021 baal37e17 672
more... (Total Hit Count: 53 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ856460 whsctal36d14 763
more... (Total Hit Count: 335 )
/rice/oryzabase