cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK108389     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0571200 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 28,587,806 -  28,589,054  ( + ) ;   1,249(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 28,587,806 -  28,588,126 ( + ) ;   321 (bp)
Exon 2 Location 28,588,212 -  28,588,339 ( + ) ;   128 (bp)
Exon 3 Location 28,588,468 -  28,589,054 ( + ) ;   587 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0571200 Os05t0571200-01 002142F03 111242 002142F03 17856 LOC_Os05g49620.1 AK108389 39508 AP008211.2 255675924 BAF18286.1 113579923 NC_008398.2 297605017 NM_001062907.1 115465544 NP_001056372.1 115465545


Chromosome: 5 ,  position: 28,587,806 - 28,589,054 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atcctacctc acacgctctc accaacacaa gaaaccacac gcttacgaga cgccacggcg 
000061 gcggcggcgg cgatggtgga gctctgcggc ggcgaggggg aggggcagat catgctggcg 
000121 acggagctgg cccagctgcg ggccatggcg agggagctgg aggcgaagat ggacccggac 
000181 agggtggccg cgcgggagct ctgcagggcg ctggcgtcgt ccgtcgaccg gtccatccgc 
000241 ctcgccgcgt cctgcttccc gccgccggag cacccgcccc ccgccgccgg caatgccggc 
000301 agggacgccg cgttcaagaa gaggcaagtc atggttcccg gtcatggtgg tttaatttca 
000361 gggttgagag atcgccggag caacgctctg acatgtgttt cgatgcagga aggggatggc 
000421 caaggtgagg aggcaggtga gggtgacgtc ggtgcaggac acggcgtcgc tggacgacgg 
000481 cctgagctgg aggaagtacg gccagaagga cattcttggc gccaaatacc cgaggtcagc 
000541 atcgacgtca gcaaatcatc cattgatgac gtcactctca ccttccgcta attaaaaacc 
000601 aatcaatggc cgccgccgcc gccgccgccg ttgttgtgac acgagcttga tctctgctgc 
000661 agggcctact tcaggtgcac tcaccggcac acgcagggat gcaacgcgac caagcaggtg 
000721 cagcgcgccg acggcgaccc gctgctcttc gacgtcgtct accttggcga ccacacctgc 
000781 ggccaggccg ccgtcgccgc cgccgcccag agcgcgccgc ccgagcatgc cggccaggag 
000841 cagcagaggc agagctcgct gctcgctgcg ggaacggaag gaattcatca gcaggtagtg 
000901 gcagagccta tggcggcgcc gttcttgttc acctcgacgg cggccggcgg cgtcgacgac 
000961 ggctacttct ccttcatctc gccggcgaac tccgactgcc agttcagcag cgacttctcg 
001021 gcgggcagcg tcggggttga catggaccac gaggctcgtt tcgaagatct tttctcgagc 
001081 actcttgagt ttttccaatc ggagattcag aatctgtagg tggccgaatg cacgcagtaa 
001141 ccgtactttg ttaaaggttc gcatcagtat tagctactgg cctactccat actactctgt 
001201 acagcctcta tgctttttcc ttatgaatga atctactatt agttgctaa

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ962380 whchul29j17 564
more... (Total Hit Count: 3 )
/rice/oryzabase