cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK108033     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0464100 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 22,886,283 -  22,890,945  ( + ) ;   4,663(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 22,886,283 -  22,886,615 ( + ) ;   333 (bp)
Exon 2 Location 22,887,203 -  22,887,334 ( + ) ;   132 (bp)
Exon 3 Location 22,887,445 -  22,887,556 ( + ) ;   112 (bp)
Exon 4 Location 22,887,643 -  22,887,863 ( + ) ;   221 (bp)
Exon 5 Location 22,887,939 -  22,888,104 ( + ) ;   166 (bp)
Exon 6 Location 22,888,880 -  22,889,125 ( + ) ;   246 (bp)
Exon 7 Location 22,889,755 -  22,889,850 ( + ) ;   96 (bp)
Exon 8 Location 22,889,947 -  22,890,099 ( + ) ;   153 (bp)
Exon 9 Location 22,890,671 -  22,890,945 ( + ) ;   275 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0464100 Os05t0464100-01 002137B12 110885 002137B12 11277 LOC_Os05g38850.1 AK108033 36662 AP008211.2 255675924 BAF17691.1 113579328 NC_008398.2 297605017 NM_001062312.1 115464354 NP_001055777.1 115464355


Chromosome: 5 ,  position: 22,886,283 - 22,890,945 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gagcttcacg ccgtcctcgc tcgccgcgct aaaaatttcg ctccgcccgc cccccaactc 
000061 tcctctcccg ccgccgccgc cgctgccgcg caactcgccg gagagagaag ggagcggccc 
000121 atttctcagg cgaacatgta cgacgatggt cctcgcaagg gaaaacccgg cggcctctcc 
000181 atggacgccg ccaccgccgc ggggctcgcg gcggtctggc cggagtactt cccggaggag 
000241 agcgagttcg ccgcggacgg ccgcagcgcg cgcctcgccg ccgacctggt cgacctcttc 
000301 tcctcccccg acgcgagcga cctcctctcg cgagtaagcg gtggctcccc tcccccattt 
000361 cattcctctg cggcgttgcc cttcgagctc tcctcacggc ggaccggcgg tgcccatgct 
000421 agggttccgc gcttgtggta tggtccgatt gttgagatcg gttcatgcgt gatcggtgtt 
000481 acaacttaga atatatcagt ggtggcattt ctcgataatg tctacgattt tagcggatgg 
000541 acgctccaat cgttaattga aatgttctgg aaatcgcaac taaagtgagt actgtgagca 
000601 attcataaat gtttttctaa ggaatcttcg caagtgttta ctttgtctta aacaagagca 
000661 agtgtttaag cttgtaaagg ttcctgttat agtgttatta cctatttaat ttagctcgtt 
000721 cagggagctt gcaactcgat gttaatgggc gtttagtttc tactctctta atgccttaat 
000781 tgcgaatgca tgaatttcat atgaattagg aaacaattca atcattgcaa gaatcttaaa 
000841 atgcgaattt gtaatttact ctctttggtt aatgtggtta ctagtagtta ccacttacaa 
000901 cttcatggct tcatgcacag gtcgaagatg atggtgatat cctctccctt ccagttgatt 
000961 tccagcagct atcgaatttg acctggatta ctgaagctct ccaggaaaat ccaaaagaag 
001021 ccttgctttc catgggagct gcagttcatc tggttgatgt ttctattcat gttttcctag 
001081 aattaatgag cctgttactt ttgtagtgct ttcatgtttg gtccactata cctgatatgt 
001141 cagttcttga tattttcttc agattgtgtg tgctagcagg gacttgcagt tgggcgacat 
001201 caacaaaatc aatatcaggc tttacaacca caccaagact attgccttga agaatttaaa 
001261 agcggcgtat attagtaaat gtcattctgc cttttatcat cgcgtgctaa agtttgtgca 
001321 catataaatc aaagtactaa tttgtagatt cacttggcag agaaacttgt gacagtgcgt 
001381 ggaacagtct taaaagtaag tacggtgaag cctctagtgc tgcagctgaa tttccaatgc 
001441 atgaaatgcg ctacaaaatt ccctcgtgtg ttctgtgatg ggaagttttc acctccagta 
001501 tcgtgcagta ttcagggatg caagagcaga acattcatac caatgagatc tactgcaaag 
001561 ttgatggatt ttcagaaaat aaggcaagtg ataaataaac tactacatta tcctttattt 
001621 atggtactaa agcttttctc atattgtttc caaatcagga tacaagagct tgctagtggt 
001681 gaaagccatg aagaaggcag agtgccacga actatagagt gtgagcttac agaggatctt 
001741 gtagattgtt gcatccctgg agagactgta acagttactg gaatcgtcaa agtactgaac 
001801 aactacatgg atgttggagg aggtacaatt tttgagaaat taatatttct ttgcattact 
001861 tctttttcta aaccttgtgg atttactggc tcacacacag gcttcaaatt ttgcgttttc 
001921 attggcaatc attggcaaaa aatgtttatc tataaatgcc tcagatttgt tcacaacacc 
001981 tatagaggca catatgctgt cagcatcttg ttttatttga tcattaatct gattggatgt 
002041 taatgttctg attagagagc cttggccatc taccatgtga cattacgatt ttttttttct 
002101 agatggagca gttgaaaaga aaatagcatt tgagcaaagc aagaaaatag ctttctattt 
002161 ttttgtttct tccagaccat atatcctaaa tctgatatat agaaatcaga atcaccagat 
002221 caactcatgg actactgagc ataaacagtt cattagaagc attattatag tccatgttaa 
002281 ctatagggaa acctatctaa tgctgtattt ggcagcatga gggtatctat tttacctctc 
002341 ccccacttta cattcttaga acttgcaaga tcatttggtc tttgttagat atatgcatgc 
002401 tttctatgag ctccttgaat ttaagaatca agaaattatt tataggataa tggagaacaa 
002461 attagttatg atgtacagcc ttactattgt ttgaccctta cccgctgatg ccatatatgc 
002521 agataaactc ttatttgatc tgagcttccc cccttctaat ttcttaattt tacacaatat 
002581 ttcatttgta tcttcaggga aatccaaaag caggaaccaa ggtttatact acctgtacct 
002641 ggaagcaatt tcagtaagaa actcaaaggt ccatgctgct tcaggaaatt cagatgctgc 
002701 tagtggatct ttcggttttc aagcttttac tgaaaaggat cttgaattca tctccaaatt 
002761 taaggaagaa cacggtgctg atgtttttcg tcaaattctt cactcctttt gcccctctat 
002821 ctatggacat gaacttgtaa aaggtattgg tattatactt atcttccatc tactatttaa 
002881 tgtggttaaa gatttaaatt taattcactc tgagctgacc caataacgga atgaaatatt 
002941 ttggtgaaac ctaccgctcc ccttaatttc tgtttacacg aaatgagata acaattcctt 
003001 tttttctttt tattcaatta gttctggacc gctgcagcat tttctgccca aatgatcttc 
003061 tataggaact ctcttgtgct gcatgaaaaa aatgagaatg tatctcccaa gctcctaaac 
003121 tgtgattttt gcaaaaactt tctatatata aattgcttag aatacttttc aaaaacaact 
003181 tttgcacttt gtaataatta attcattcgt ttgtaccctt gaatattatc ataaaatcag 
003241 ataatctatc atctattcat ctattcagaa caatcaaact gggggtggtg aaattgacta 
003301 agctactggt agttcccgtt ctctgagata tgtgtgttct ccttttcaac tagagcatac 
003361 agcacccatt ctactacact actgtttaca aacatgccag cccttcttgg tccttttcct 
003421 gctttgcatt ttattgctag atacaactaa atgaatattt ccaatttttc agctggtatc 
003481 acccttgcgc ttttcggtgg tgtgcagaag cactccattg atcaaaacaa ggtcccagtg 
003541 agaggagaca ttcatgctgt tgttgttggt aatccttcac ttatagaggg tctaagcttc 
003601 ttggtaagaa ttttcttagc atttctcaca gtgcaattaa aactcttgct caatgcaatt 
003661 ctaggtgatc ctggactagg caagagtcaa ctgctacagg ctgcagcagc tgtttctcca 
003721 cggggtatat atgtttgtgg gaatacaaca acaaatgctg gtctaactgt tgctgtggtt 
003781 aaagattcta tgtcaaatga ttatgcattt gaggctggta agcatatgag attgtccttt 
003841 gtcccttccc tagactgttg tttaagttct gttacctaac tggctgtctg tcctggtggg 
003901 tttttgtctt aaaacctgtg agtggaacaa aataagtact cccgttgttc caaaatataa 
003961 ggatttctag aactcaaaac attgtactcc ctccgtccca taatataagg gatggtatgt 
004021 ccagattcat cgtattagga tgtgtcacat ccacccaaaa tcctttatat tacgggacgg 
004081 agggagtacc agatataagc atttctgggc actgattcca acgcacagaa atccatatat 
004141 tttcagccaa tcagttgttt catgttcgag aggggaatct aagcaattca aaatttgaca 
004201 actgagatga ctaaaaggga atcttttccc ttaacttcat tatttgctaa aaaaaaccta 
004261 gaaatgctta tattctggaa cggagggagt aggatgcaag tgggtctggt agtatttttt 
004321 ttcttgacta atttaatggc acatacataa agtggcctat caaataattt tgaccctttg 
004381 gtttacaggt gccatggtcc ttgctgaccg tggaatatgc tgtatcgatg agttcgataa 
004441 aatgtcagca gagcatcagg ttttaacctt gtataagctt cactctgaaa tgttaattag 
004501 aaagccctaa cctgccacat catgtttcta atgaatttga gttcataggc tttactggaa 
004561 gccatggagc agcaatgtgt atctgtggca aaggctggcc ttgtggcaag tttatcagcc 
004621 cgtacttctg tgctagcggc tgctaatcct gttggtggtc att

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs  
Acc. No. Clone Name Length
CJ540920 rwhem15n04 704 view details
/rice/oryzabase