cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK107746     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0421600 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 20,736,587 -  20,738,169  ( + ) ;   1,583(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 20,736,587 -  20,736,646 ( + ) ;   60 (bp)
Exon 2 Location 20,737,389 -  20,738,169 ( + ) ;   781 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0421600 Os05t0421600-01 110598 002132H04 17267 LOC_Os05g34830.1 AK107746 14820 AP008211.2 255675924 BAF17497.1 113579134 NC_008398.2 297605017 NM_001062118.1 115463966 NP_001055583.1 115463967
Os05g0421600 Os05t0421600-01 110598 002132H04 17267 LOC_Os05g34830.2 AK107746 14820 AP008211.2 255675924 BAF17497.1 113579134 NC_008398.2 297605017 NM_001062118.1 115463966 NP_001055583.1 115463967
Os05g0421600 Os05t0421600-01 110598 002132H04 17267 LOC_Os05g34830.3 AK107746 14820 AP008211.2 255675924 BAF17497.1 113579134 NC_008398.2 297605017 NM_001062118.1 115463966 NP_001055583.1 115463967


Chromosome: 5 ,  position: 20,736,587 - 20,738,169 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atgcacgagt accgcctcgc cgacgtcgac cgctccgccc gcaagaagaa caccctccgg 
000061 gtacatatat acgccattaa ttaattacct cgaatttgct cttaattcat caaattcaaa 
000121 ttcagacgaa ttctactctc agttaatcaa gtttagacaa gaagttctag ctgattggtt 
000181 atcggcacga tcgatatcat atgattttga tgtggattaa ccacacaaaa ttcgatcgag 
000241 atgctaatta ctgataagat aagtacggac ttttggaagg acaaatgatt cctcttgcta 
000301 ggttagctta ggttagcatc tgtgtgccgc tttcttgcaa gtgtgaacgc ggtggatgcc 
000361 ggcgcgggtc accacctcca cgcgcgcaaa taatttactt tctctgtttc acgatgtaag 
000421 ttattctaat atttttcaaa ttcatattga tgttctatct atattcatta aacattaata 
000481 tgaatgcgga aatatttatc tagatttatt aacatcaata ttaatatgag aaatgataga 
000541 ataacttaca tcgtgaaaga gagagtattg tataaacgct aagctttaaa ttgcgggcga 
000601 cgatagcgac ggatgcgagg agatatgcac gcccaccaat aatgcgcttc ggaggaattt 
000661 cgattattgt tcataattat tgctgatact gtttgtttta cattaattgg gcggatttca 
000721 tcatatattt attgttgtga tcacgaaatg atatggtctt gatgaaattt gatttgattt 
000781 ttggtggttt gtgttattgc agctagatga ttgggtcctg tgccgaatct acaacaagaa 
000841 aggcggcgtg gagaagccga gcggcggcgg cggcggcgaa cgttcgaata tgatgagcca 
000901 cggggagacc gcgtcggcgg gctcgccgcc ggagcagaag ccggccgtgc tgccgccgcc 
000961 gccaccgccg tacgcggcgg cggcgccgtt ctcggagctg gcggcgttct acgacgtgcg 
001021 gccgtcggac tcggtgccgc gggcgcacgg cgcggactcg agctgctcgg agcacgtgct 
001081 gacgacgtcg gcgtcgtccg gcggcgtcgt cgagcggccg gaggtgcaga gccagcccaa 
001141 gatcgccgag tgggagcgca cgttcgccgg cgccgccgcc ccggctggcg ccgtcagcac 
001201 ggccggaccg attctgggcc agctcgaccc cgccgccgcc gtcgccggcg gcggcgaccc 
001261 gctcctccag gacatcctca tgtactgggg caagccgttc tgacggctcg gctcggctcg 
001321 gcggcttgag ccgggaggga tgaatgatct gatattctat cggggtggct cgggcgagcc 
001381 gctggaatcg atcggtggcc gttggatggc ggccgagtta ttggtagccg tcagatggga 
001441 gatggaatgg cattagttag ttactagtat ccgtatggac ggcggcgatg aaacagggga 
001501 gccccgagat gcgtgtagga aggagatgca tggtactgta ctcgagaatt ataagccgtg 
001561 tgtatatgcg aaattggttg gct

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY846553 bart33b03 541
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ650921 whem2m21 431
more... (Total Hit Count: 5 )
/rice/oryzabase