cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK107068     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0208100 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 6,701,064 -  6,702,944  ( - );   1,881(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 6,701,064 -  6,702,944 ( - );   1,881 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os05g0208100 Os05t0208100-01 002121E08 109919 002121E08 16716 LOC_Os05g11790.1 AK107068 7241 AP008211.2 255675924 BAF16819.1 113578456 NC_008398.2 297605017 NM_001061440.1 115462610 NP_001054905.1 115462611 Q60EY8 CIPKK_ORYSJ


Chromosome: 5 ,  position: 6,701,064 - 6,702,944 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tcgtctctca cccattaacg acatgggctc tccacgttca gccatggccg ccgtgaacat 
000061 acactaatcc ggccgtcgcc tccaccagct gccggtggcg gcgccgccgg gcgccggtgt 
000121 caagatgccg gagaagggca ccgtggtgat gagccggtac gagctcggcc gctcgctggg 
000181 gcacggcacg ttctccaagg tgtaccaggc caggagcctc gtgtccggcg agaccgtcgc 
000241 cgtgaaggtg atcgacaagg agaaggcgct gcgcgccggc gccggcatgg tcgaccagat 
000301 cgagcgcgag gtcgccgtca tgcggctcgt cggccgccac cccaacgtgg tccgcctcca 
000361 cgaggtgatg gccagcagga gcaagatcta cttcgtcatg gagctcgtcc gcggcggcga 
000421 gctcctcgcc aggctggtcg ccggcggcgg ccgcctcggg gaggacgcgg cgaggaggta 
000481 cttccaccag ctcgtcgccg ccgtcgactt ctgccacagc cgcggcgtct accaccgcga 
000541 cctcaagccg gagaacctcc tcgtcgacga cgacggcagc ggcggcggcg gcaacctcaa 
000601 ggtcaccgac ttcgggctca gcgcgctcag cgcgtcgcgg cggcacgacg gcctcctcca 
000661 cacgacgtgc ggcacgccgt cgtacgtcgc gccggagatc atcggcgaca agggctacga 
000721 cggggccacc gccgacgtct ggtcctgcgg cgtcatcctc ttcctcctcc tcgccggcta 
000781 cctcccgttc ttcgattcca acctcatgga gatgtacaag aagatcacca atggcgagtt 
000841 caaggtcccc gactggttca cccccgacgc acgcagcctc atctccagac tcctcgaccc 
000901 aaaccctaca actcgcatca ccatcgacga gctcgtcaag catccatggt tcaagaaggg 
000961 acacaccaag cggccggcaa gctcgaacac catgaaactc aacgaggagg agaaaccagc 
001021 gaacgccgcc atgaacatga agccggcgag cttgaacgcg ttcgacatca tctcgctctc 
001081 gcagggattc gacctgtcag ggatgttctg ctgccatggc cacagcagca ggacgcagga 
001141 tcagctgttc gtcaccggga agccggcgac ggcgatcgtg tcgaggctgg aggagatcgc 
001201 ggagacggag cacttcacgg tgaagaagaa gcagaagaag aggcaagaag aggacgggat 
001261 ggcggtgaag ctgcaggggt ggaaggaagg gaggaaaggg cagctcgcca ttgacgccga 
001321 gatcttcgag gtttcgccgt cgtgctacgt cgtcgaggtg aagaaaacgg ccggcgacac 
001381 gctggagtac caggcgttct gcaacagaga cctcaggccg tcgctgaacg acatctgctg 
001441 gacctcgccg gcgacagcag cgtcggagaa gaaccagctg ccggcagtgt cggaggtgtc 
001501 gccactgagt agtcctcgga attgatgtga cagattatct aggtgcagtg gcagatattg 
001561 atcatcagat atgtgctgtt tcccttgttg tttcctttgc tttgaattgt tgttttgatt 
001621 ttttttttat tcttgtttgt gtttcataat gatcttgggg gtagtggtct ggtatttcca 
001681 agttcaagat gaatttcaat tattgttttt ttctgttctt ttgttgtgtg gtggactggt 
001741 ggtttagtgt tgattgttgg acataggtga tagaatgtgt tctccttttg cttaaattgc 
001801 atggtccatt tgtaaggtaa attaatggca tcacaccacc ataatatcca atttatgaat 
001861 gttttagaaa tctctttttt t

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ640772 whec2c03 634
more... (Total Hit Count: 3 )
/rice/oryzabase