cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK106696     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0428600 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 21,091,778 -  21,094,050  ( - );   2,273(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 21,091,778 -  21,094,050 ( - );   2,273 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0428600 Os05t0428600-01 002114D06 109547 002114D06 16445 LOC_Os05g35400.1 AK106696 32649 AP008211.2 255675924 BAF17527.1 113579164 NC_008398.2 297605017 NM_001062148.1 115464026 NP_001055613.1 115464027


Chromosome: 5 ,  position: 21,091,778 - 21,094,050 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atcgacacaa aaccaaaagc gaagacgacg atcatggcgc ggccgcggcg cgcttcgacg 
000061 gcaacgacaa tgcagctggg gcttctcctc gccgcgcttc tcctcttcac gtcgtcgctg 
000121 gccggctctg tggcggcggc cgcaccgccg ccgccggcgg gggccaaggg tggtggtgcc 
000181 aagagcggcg gcggcggcgg caccgtgatc gggatcgacc tcggcacgac gtactcgtgc 
000241 gtcggcgtct accggaacga ccgtgtcgag atcatcgcca acgaccaggg gaaccggatc 
000301 acgccctcgt gggtcgcctt caccgacggc ggcgagcggc tcatcggcga ggcagccaag 
000361 aaccaggcgg cggccaaccc ggagcggacc atctacgacg ccaagcggct catcggccgg 
000421 cagttctccg acgccgaggt gcagcgcgac atgaagctgc tgccgttcgc cgtcgtcgac 
000481 cggaacggca agccgcacgt gcgcgtcgag gtgaaggacg gcgacgtgcg cgtgttcagc 
000541 ccggaggagg tgagcgccat ggtgctcacc cggatgaagg agacggccga ggcctacctc 
000601 ggcgagaagg tcacgcgcgc cgtcgtcacc gtcccggcct acttcaacga cgcgcagcgg 
000661 caggccacca aggacgccgg cgtcatcgcc gggctcaccg tcgaccgcat catcaacgag 
000721 ccgaccgccg ccgccatcgc ctacggcatc gacaagaagg gcgcggagaa gaacgtcctc 
000781 gtcttcgacc tcggcggcgg cacgttcgac gtcagcatcc tcgccatcga caacggcgtg 
000841 ttcgaggtcc ttgccaccaa cggcgacacc cacctcggcg gcgaggactt cgaccaacgc 
000901 ctcatggacc acttcgtcaa ggtcatccgc cggaagcacg ggcgcgacat cgccggcgac 
000961 gcgcgcgcgc tgggcaagct ccgccgcgag tgcgagcgcg ccaagcgcgc gctcagcaac 
001021 cagcaccagg tgcgcgtcga gatcgagtcc ctgttcgacg gcgtcgactt ctcggagccg 
001081 ctctcccggg cgcggttcga ggagctcaac ggcgacctct tcaagaagac gatggtgccg 
001141 gtgaggaagg ccatggcgga cgccgggctg ggcaagggcg acatcgacga gatcgtcctc 
001201 gtcggcggca gcaccaggat ccccaaggtg cagcagctgc tcaaggacta cttcggtggc 
001261 aaggagccca accgcggcgt caaccccgac gaggccgtgg cgtacggcgc cgccgtgcag 
001321 gccagcatca tcagcggcca cgtcgacgag aacacggaga gcatgatcct cctcgacgtc 
001381 gcgccgctca ccctcggcct ggagacggcc ggcggcgtga tgaccaagct gatcccgcgc 
001441 aacacggtgg tgccgacgaa gaagacgcag gtgttcacca cgtacaagga caggcagacg 
001501 acggtgacca tccaggtgtt cgagggcgag cggagcatga cgagggacaa ccggctgctc 
001561 ggcaagttcg acctcaccgg catcgcgccg gcgccgaggg gggcgccgca gatcgcggtg 
001621 acgttcgagg tggacgccaa cggcatcctc agcgtgctgg ccgccgacaa ggccaccggc 
001681 aggtcggaga agatcaccat ctccggcgac gaccgcaaga tcagccagga ggagatcgac 
001741 cggatggtgc gcgaggcgga ggagttcgcc gacgaggacc gccggcacag ggagcaggtg 
001801 gacgcccgga acagcctgga ggcgtacgtc tacaacgtca agagcacgct cggcggcaag 
001861 atggcggacg ccatggaggg ggaggagaag gagaaggtgg aggaggcggt gagggaggcg 
001921 cacgagtggc tggacggcaa cccggacgcc ggcaaggagg agtacgagga gaagctgcgg 
001981 gagctggagg acgtgtgcaa ccccgtcatg tcggcggtgt accagaggtc cggcggcggc 
002041 ggcggcgcac cggaagatgg caacgtcgac gacgaggatg accacgatga gctttagttt 
002101 agtccggctg gcggctgcta agctagctag ctcctgtttc actaactatc tagagttcct 
002161 tttttttttc attgccgtat aaaataattt tactaggcaa acaattatat tgcaaatata 
002221 ttagtatttt tgtattacat tcatagtttg gattcgatcg aaagtgtgtt ttc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV938029 bah15l11 615
more... (Total Hit Count: 137 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ646210 whei3p03 441
more... (Total Hit Count: 726 )
/rice/oryzabase