Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK104323 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os05g0592800 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 5 |
| RAP - Location, Length | 29,654,680 - 29,657,980 ( - ); 3,301(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 29,654,680 - 29,655,224 ( - ); 545 (bp) |
| Exon 2 | Location | 29,656,413 - 29,656,518 ( - ); 106 (bp) |
| Exon 3 | Location | 29,656,616 - 29,656,942 ( - ); 327 (bp) |
| Exon 4 | Location | 29,657,043 - 29,657,980 ( - ); 938 (bp) |
| Related Rice IDs | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| RAP Locus | RAP ID | KOME Clone ID |
KOME Clone Name |
KOME Cluster ID |
MSU ID | cDNA Accession No |
RiceXPro FeatureNum |
UniProt Accession No |
UniProt Entry Name |
| Os05g0592800 | Os05t0592800-03 | 102927 | 001027G08 | 2926 | LOC_Os05g51510.1 | AK104323 | 23718 | Q6L4R7 | P2C53_ORYSJ |
| Os05g0592800 | Os05t0592800-03 | 102927 | 001027G08 | 2926 | LOC_Os05g51510.2 | AK104323 | 23718 | Q6L4R7 | P2C53_ORYSJ |
Chromosome: 5 , position: 29,654,680 - 29,657,980 bp |
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| Sequence (Data source : RAP-DB) | |
|---|---|
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Nucleotide
Fasta Format |
000001 acgcaacccg atccattccc aaatccctcc tctcatcaac tcgactctcg gtcggcgtca 000061 ccggcgtcgg aggcggaggc ggaggcggcg gccgcgtcgg caaggtagtg ctgtgctgga 000121 tcgagtcgag cagctggctg cgcgcgcggt ttgtggctct ctgtgtgagt ccggcgctgc 000181 tgcttcaatt ccttcttccc cagggcacct cccgtgagcc gccatctccc tccctcacct 000241 acctctggat tcgctccaga tccgcccatg agtaggcccc cacgcccacc gcctgctcgc 000301 catcgcgcct ccactccacc acaccatgcc gatccccacc acctctgaca ctactccgcc 000361 cctccccctc tctcattccc atggaggacc tcgccctgcc cgccgctcct cctgccccca 000421 cgcttagctt cacgctctta gccgccgccg ccgccgtcgc cgaggccatg gaagaggctc 000481 tgggcgccgc gctgccgccc ctcaccgccc ccgtccccgc ccccggagac gactccgcct 000541 gcgggagccc gtgctccgtc gccagcgact gcagcagcgt cgccagcgcc gacttcgagg 000601 gcttcgccga gctaggcact tcgctcctcg cggggcccgc cgtcttgttc gacgacctca 000661 ccgccgcctc cgtcgccgtc gcggaggctg ccgagccgag ggctgtgggg gccactgcga 000721 ggagcgtgtt cgccatggac tgcgttccgc tctgggggct ggagtccatt tgcggccgcc 000781 gcccggagat ggaggacgac tatgccgtgg tcccgcgatt tttcgacctt cctctgtgga 000841 tggttgccgg cgacgcggca gtcgacggcc tcgaccgggc ctccttccgc cttccagccc 000901 atttcttcgc cgtctacgat ggccacggtg gcgttcaggt tccctttgct tttgtttttg 000961 cctcatcaca gtcacagcac attaaacgaa tccaacacac cgatgataac cttttctcca 001021 tgctctcatc tgttgcaggt tgccaattac tgcaggaaga ggatccacgc cgtactgaca 001081 gaggagctgc gtagagcgga ggacgacgcg tgtggctctg acttatctgg ccttgagtcc 001141 aagaagctgt gggagaaggc gttcgtggat tgcttcagtc gtgttgacgc tgaggtggga 001201 ggaaatgctg cgtctggagc accgcctgtt gctccagaca ccgtggggtc aactgctgtc 001261 gtcgcagtcg tttgctcgtc acatgtcatc gtagccaact gcggtgactc gcgtgctgtt 001321 ctctgccggg gcaagcagcc cctgcccctg tcactagatc ataaagtaag ccatggactc 001381 ccattgattc catgtatgag taattgactc gagtcctgag gataattgga tacgaattgc 001441 cttgttcttc ttcgtgcttc agccaaatag ggaagacgag tacgcgagga ttgaggcgct 001501 gggtggcaag gttatccaat ggaatggtta tcgagttctc ggtgttcttg ccatgtcgcg 001561 atcaatcggt atgcattctc acccttttga cataattgaa ccagtgtttg tttgtgcttc 001621 attgtttatg cttctccaac tttactgatg tgactgtgct gatgatagct gattgggtaa 001681 ttgatgtgtc aaaggaaaag tctcttgact ggttcatttt gttattttgt tctgaattgt 001741 gatgatatat ggtgctctag ggtttgtgac ttttctaagt gaaaaatcac tggctgattg 001801 ttgctccctg gtgtaatgac attgtacccc caagtttatt tacaaatacc ttgcatcaat 001861 gcgattgttt gcaactggta gtgagtttgt acctatggtg gcagagagag ctcctcggct 001921 aattactttg ttagtttgtt cctagtcata ctgttaagtg atttgcgatg ctatgattca 001981 ggcatatatt tctatatttg ttagctatgt tgccatatgc gatactggta taggcgtttg 002041 gtgagtatac atgcagttca caataggaaa atataagaga atatgagaga cttagacatt 002101 gagatcacct tgatggaaaa atattaagag taatactaaa tggcagaata cttcaaagta 002161 gtgatttctg tcataccaaa cactaggatg agtcactaac tacacgacag ctgtataagc 002221 cattgtttgc attcattgtg atcaaggaac agctgtacta tatcgaggat tgtaaggact 002281 gatgtaataa tgtgccattg tgcatcaatt gagctttgga tgttagcttc acaccttcac 002341 ccatgttgct gcacagcagt caatcatatt tgttaattta ctgttgcagt cagatgaggt 002401 ttcttcccat tgaatcttaa gggagaaagc ctggcccaat atatatcaca agacttgaat 002461 aactctttca tcagcattta ctctgattcg cttttgctgt attgatgctt caaactagag 002521 agagaatcat aacatcatgc tattcttctg ttgtaccccg gtttattagt tccagtgttc 002581 atgtatcctg tcagtttttg ttgctcttaa catgttattc tgtgactggt aatttgattt 002641 caatgtcttt aatatatggc ttttgttgat acttcaaagt tcaaagtaga taaattatgt 002701 ttgatttatt ggtgcgcttg ccaatacttc tggtctgtgc attgatgtat ttgcagggga 002761 caaatacctg aagccatata taatcccggt ccctgaggtc acagttgtcg ctcgtgcaaa 002821 agacgatgat tgccttattc ttgcaagtga tggcctttgg gatgtaatgt cgaacgaaga 002881 ggtctgtgat gctgctcgca agaggatatt actatggcac aagaagaatg cggccaccgc 002941 atcaacgtca tcggcccaaa taagcggtga ttcttcagat ccggctgctc aagcagctgc 003001 cgactacttg tccaagcttg ccctacagaa ggggagcaag gacaacatca ctgtcgttgt 003061 aattgacctc aaggcacata ggaagttcaa gagcaaagca tgacattgcc tccatgaaca 003121 ataacaatag tttataggaa gctagaaatg tgggaaatcc aagacaattt atttagctgc 003181 tgcaccggta caatttgttt agctgctgtt cagtactggt gctgctgcag ctgcagctgc 003241 ttctttgccc tcgccattta tttctgccga gggatgtact actagtatac tgtatttttc 003301 t |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Barley ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| AK251854 | FLbaf131e04 | 2116 |
| more... (Total Hit Count: 4 ) | ||
| Hit Wheat ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| CJ961461 | whchul26i04 | 693 |
| more... (Total Hit Count: 22 ) | ||
