cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK103412     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0170000 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 4,195,613 -  4,200,455  ( - );   4,843(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,195,613 -  4,195,968 ( - );   356 (bp)
Exon 2 Location 4,196,105 -  4,196,233 ( - );   129 (bp)
Exon 3 Location 4,196,607 -  4,196,756 ( - );   150 (bp)
Exon 4 Location 4,196,844 -  4,196,909 ( - );   66 (bp)
Exon 5 Location 4,197,186 -  4,197,230 ( - );   45 (bp)
Exon 6 Location 4,198,084 -  4,198,164 ( - );   81 (bp)
Exon 7 Location 4,198,264 -  4,198,345 ( - );   82 (bp)
Exon 8 Location 4,198,633 -  4,198,704 ( - );   72 (bp)
Exon 9 Location 4,199,535 -  4,199,635 ( - );   101 (bp)
Exon 10 Location 4,199,752 -  4,199,868 ( - );   117 (bp)
Exon 11 Location 4,199,991 -  4,200,455 ( - );   465 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0170000 Os05t0170000-01 J033128G01 214264 J033128G01 13685 LOC_Os05g07790.1 AK103412 4120 AK103412.1 32988621 BAG96067.1 215737138 NC_008398.2 297605017 NM_001061301.1 115462332 NP_001054766.1 115462333


Chromosome: 5 ,  position: 4,195,613 - 4,200,455 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gccgcgcttg ctcggcacgg caacccacgc gaaatcggag attccttcga ttcacgagat 
000061 caccacgagt ccaccaccct cctcctctcg ctggattcga tgggcgctcg gtgagatccg 
000121 aatcccccac ggtggtcgcc ggagatgaag ccgccgcgga ggtggatgta cgggcggggc 
000181 ggcgggaagg ggaagccggc ggggctgctg ctgctggggg tgttcctctg cttgtcggtg 
000241 gtgctgctgc tgctgctgca cggctcgtcc ccgtcgctgg agggcgaggg gaggaagcct 
000301 gaggcggtgg aggcggcggg gggaggggga gaggaggagg aggtggcggt ggcgcgggcg 
000361 gaggtggagg aggcgccgct gccgccgggg aacgcgcggc tcgccttcct cttcatcgcc 
000421 cgcaaccgcc tcccgctcga cctcgtctgg gacgccttct tccgcgtaag cgcgcgcctc 
000481 gcccggatct cccccttcct ctcgctcttg ctcggatggc tcccaatttc agcgaatgct 
000541 ggtttaattt gaatcctgat tgcattgcgt tttttggggg tgagtagggt gacaaggaag 
000601 ggagattctc catcttcgtg cactcgcggc cggggttcgt gctcacccgc gccaccaccc 
000661 gatccggctt cttctacaat cggcaggtca acaacagcgt ccaggttcgc gacctcgtcc 
000721 ccacttccgt tggcaatgtg atgtgatccg tcggtagcag catccgttgc agtccacact 
000781 gggttcctga tgagttgggc atgtgtgatt tgtccttcag gtggattggg gggaggcgag 
000841 catgatcgag gctgagcgtg ttctactcgc ccacgcgctc aaggacccct taaacgagcg 
000901 cttcgtgttc gtctccgaca ggtatggatt atggaattat gatgtgtgct agtgtgtatg 
000961 cttggataaa gtattactga ctttagatac taagttgatt ggcacaaaat tttggcaatg 
001021 cccaaaaaat ttagtcatgt gttctgttta tagccaaaaa ttaagcacta ctaaattatt 
001081 tgtcttggtt gaatagcaaa tgcaagttta gtagaagcaa atgaatgcct agccagtttt 
001141 tgccagaaaa tttggcaatg gccagttctt gccattgcca aaaaaattgg taaggctatg 
001201 aaccaaaaca agccctaact gcaatctgtg ttggcttaat ctcttgttca gcacaatgtg 
001261 ttgtttctag gttctgatca taatgaatta agggaatgtt cctgaacata atgatatgtc 
001321 cttacatttt tataaatgtg gactgttatc tagtaaagat tgtttgtttt ttttaatcat 
001381 cgtttggcta actaattttt ttttccaata tgcaatgctc agatgataag tagtttctgt 
001441 ccgcgatttt aagctcatgc taaaaatgtg gtgcgatagc agtcctcaat cttaaattcc 
001501 atggaaatga atcttgtgtt atactgttag tctgtttcta ttaagtttaa cgggactcca 
001561 catgaagctg tactgaattt accagatgcc ttggtgcaat tttaggtatc gtttacacgg 
001621 ttgtttttct gacagctcca aatttgaact tagtactaca catctttttt tataatctta 
001681 caaagctcgt tgttgcacca ttttggatct taattggatt catgcttact aggatcttct 
001741 ctctctgcca gctgtgtgcc attgtacaac ttcaactaca cttacgacta cataatgtct 
001801 tcgtcaacca gttttgttga caggtatagg catcacaatt tcgtgttgtg tttcctgatg 
001861 atggttaaga cttaagaatg aattctgagt tcatgacaag tatcagctag taactatgaa 
001921 tgttaaagaa aagaaagaaa aaaaatcatg ttagcctttc tcattttcca ttatctaagt 
001981 atttccatgt accttgagct tcaaaatggt tcctgtagca aactgcagat ttgcagctta 
002041 aagcaccttt catttagctt gtataatatc ctgggtatta acagcatcca attgcatatg 
002101 ctggggacag ttttgctgat acaaaagcgg gtcggtataa tcccagaatg gacccaatta 
002161 tcccagtgga aaattggaga aaaggctcgc aggtaccttt ctgtttctat tgatgaaaga 
002221 taggagaatt ttgcttgaac tgtgtaacag ttagttttga taccttatca ccattcattt 
002281 gtgccataca gtgggctgtg ttaacaagaa aacatgctga agttgtggtt gaagatgaag 
002341 aggttttgcc agaattccag aagcattgca gggtatgtga ctcaatattt atgcactcta 
002401 tgcagataaa tttcagtatt gtataacata gtttactcat gatcataact gaccagtgaa 
002461 ctttttcacc ttgtaccttt catcaaatta aaatcaggat aacagaagtt gaaaatttga 
002521 atattatcaa tatttacttt tttatgacag ttttttgcat tcgcaagtga atgtgctctc 
002581 aagataatca acataggaca caaagaaact tgtagattta tgtaaactgc cacgtatggt 
002641 actgacattc tgacaatgtt tacgacaatg catgatatca gtgatttatt ttattttatt 
002701 ttttaaacct ttttaatttt tatttttaaa aataaatcat tcgaaaactt atttccaaga 
002761 tctaaacctt ttggccgtag ttggttggca aaacaacatt gccacaccgg tctggctggc 
002821 atggcagcgt tgtcttgcca caccaccgtg gctggcagga caaaactgtc acgcccgttg 
002881 cgggtgacgt gtcagtgttg ttttgtcaca ccaggcaggc tagcttggct aaaaggttca 
002941 gattttggaa atattgtaaa attgtcatgc ccattgcggg tgacgtgtca gtgttgtttt 
003001 gtcacgccag gtgggctagc ttggccaaaa ggttcagatt ttaaaattaa aaaggttaaa 
003061 aaaataaaat aattcgatac tagtaccttt gccaaatgaa tagaagatcc accggatttt 
003121 tctatatcat caacccaagt tacttaactc atgtctcttt cctatcaatt agcttagagt 
003181 tgtctattct tgttcctatt aaatgtacct ttttatttat tgcagagaag gcccttacca 
003241 gagttctggc gggactggga tcgtcctatt gtaagtgaaa gtctccaata aaatactgaa 
003301 ctgtcactta gcttgttgaa cttgctttta tgtgtttatt tttgaactgc agctggcaca 
003361 ttgagtataa taatcacaac tcttgtgcta tttcttgtac tccataaaaa gcttaattaa 
003421 cagaattatt atctatggct tcaaaattta ccactgaact ctatatctct atctaattgc 
003481 tctactgttc cagaacaaag tttaattagt aattctgtga gactaaatgc tgctcatttt 
003541 atccagcctg cggaggcatg gaaggcacat aactgcatac cagatgagca ctatgttcaa 
003601 acattgcttg cagtaagtca acaatcattt acagtatccc ttgcagctgt tcctcctcac 
003661 aaagacatct gaccgttcaa ttatttttat cgaatgcagc aacatggtct tgaagaagag 
003721 cttacacgga ggtcagttac acacagtgcg tgggatctat catcttctaa agatcgtgaa 
003781 aggcgtggat ggcatcctgt aacatacaaa atctcagatg ctactcctgc acttgtaaaa 
003841 tccataaagg tatatgtttc tttgcaatgg cacatttttt gttacctgaa agtggtgatt 
003901 atatagtatg tacatttaaa aaggaaatta agagaggctt tacttttttt tcttttattt 
003961 gaaaattctg tcattattaa aatatttaag tacaaagcaa caaccaaggt gaatgttgga 
004021 acctctgttg ggtaatggca gacgctatca attcatctgt ttcaaagctt taacaaatgt 
004081 cagtttggaa atgtgttgcg tctgataagg aatgtcagct tttgtttgtc atgtatacag 
004141 ttctgccaaa acaagctgcc cgtacgaaat gcacatgaca ttttctaact attcactgag 
004201 tacctatttg ttgaattttt aggatattga taatatatat tatgagactg aaaatagaaa 
004261 ggagtggtgt acaagtaatg gaaaaccagc accttgcttc ctttttgcaa ggaagtttac 
004321 acgagcagct ggtctgaagc ttcttgattt agtaagttca ggacctttag cttttcattt 
004381 catatcgtga tgcaaacaca ggcattccta aacctaatgt attgtctaac gaaatcacat 
004441 tgtgatttgc ttatagtttt tgctctctcc aaatttccct tttgcagtct ttgatagcag 
004501 caaatggcgc atctaccatg taaagtttct ccgtcaaaag cagaatactg ccagcttgca 
004561 catacgtaaa ggaaagtggt ggaggggaca gaagataaca gcgaattttt tttgggcatc 
004621 ttcattacaa tttgttgcac tctgaaaagg gacataggtg ttctaaagca ataaagtttg 
004681 tttcttttag cacctaggtt agtacatatg ttaacccact acttagcatt ataactgtaa 
004741 ctgtaagcaa ccacctgcag ttggattggc aagaatcacc tcagttcttt tcacgacaaa 
004801 ttcctttttc aaatttatag agaattggca tgtcttatac ttg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AK249423 FLbaf26g07 510 view details
/rice/oryzabase