cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK103315     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0129000 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 1,698,511 -  1,702,946  ( + ) ;   4,436(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 1,698,511 -  1,698,589 ( + ) ;   79 (bp)
Exon 2 Location 1,698,706 -  1,698,954 ( + ) ;   249 (bp)
Exon 3 Location 1,699,587 -  1,699,737 ( + ) ;   151 (bp)
Exon 4 Location 1,699,905 -  1,700,012 ( + ) ;   108 (bp)
Exon 5 Location 1,700,156 -  1,700,248 ( + ) ;   93 (bp)
Exon 6 Location 1,700,374 -  1,700,457 ( + ) ;   84 (bp)
Exon 7 Location 1,700,555 -  1,700,623 ( + ) ;   69 (bp)
Exon 8 Location 1,700,715 -  1,700,785 ( + ) ;   71 (bp)
Exon 9 Location 1,700,862 -  1,700,930 ( + ) ;   69 (bp)
Exon 10 Location 1,701,087 -  1,701,180 ( + ) ;   94 (bp)
Exon 11 Location 1,701,298 -  1,701,387 ( + ) ;   90 (bp)
Exon 12 Location 1,701,483 -  1,701,563 ( + ) ;   81 (bp)
Exon 13 Location 1,701,742 -  1,701,834 ( + ) ;   93 (bp)
Exon 14 Location 1,702,051 -  1,702,131 ( + ) ;   81 (bp)
Exon 15 Location 1,702,216 -  1,702,285 ( + ) ;   70 (bp)
Exon 16 Location 1,702,423 -  1,702,946 ( + ) ;   524 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os05g0129000 Os05t0129000-01 214164 J033125H02 6589 LOC_Os05g03820.1 AK103315 25645 AP008211.2 255675924 BAF16455.1 113578092 NC_008398.2 297605017 NM_001061076.1 115461882 NP_001054541.1 115461883 Q688Q9 GSH1A_ORYSJ
Os05g0129000 Os05t0129000-01 214164 J033125H02 6589 LOC_Os05g03820.2 AK103315 25645 AP008211.2 255675924 BAF16455.1 113578092 NC_008398.2 297605017 NM_001061076.1 115461882 NP_001054541.1 115461883 Q688Q9 GSH1A_ORYSJ
Os05g0129000 Os05t0129000-01 214164 J033125H02 6589 LOC_Os05g03820.3 AK103315 25645 AP008211.2 255675924 BAF16455.1 113578092 NC_008398.2 297605017 NM_001061076.1 115461882 NP_001054541.1 115461883 Q688Q9 GSH1A_ORYSJ


Chromosome: 5 ,  position: 1,698,511 - 1,702,946 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atcttctcgc tcgcctctcg ctgtctcgca ctcgccgccg ccgccgtcgc cgcgcctctc 
000061 tcgccggcgg ggaggtgagg tgagtgagcc cgattccgcg gcctcgtgag ccgagcccac 
000121 gtattgtcgc gtcaattttc cgctgatttt tctttctttc tttctttttt ttgtgattct 
000181 caaggttttt cttaggtgta cggatttgat ggcggtggcg tcgcggctcg cggtggcgcg 
000241 ggtggcgccg gacgggggag cggcggggag gaggaggagg agggggcggc cggtggtcgc 
000301 ggttccgacg gcggggaggg ggcgaggtgg ggccgtggcg gcgagcccac cgacggagga 
000361 ggcggtgcag atgacggagc cgctcaccaa ggaggacctc gtggcctacc tcgtctccgg 
000421 gtgcaagccc aaggagaact ggaggtgagg agaggagatt cccttgtgtt tgtttttttt 
000481 ttctttggtg aaattggata gcttgtcact gcttcactag tggtagtggt aggtagtttt 
000541 ttcctctaaa aaaactagtg gttggtagaa tggttcgcat ggagacatca ttatcgtatt 
000601 gggttcgatg gaaatgtgga attggagaat ttcctattgg catatcctaa cacgctgctt 
000661 tagctacgca attgcagttt tagttatagt tataaatcga ttgatttcgg gctttctatt 
000721 gatgactgat gaactggttt atatggctct agtactctaa tgttggataa acaaactgtt 
000781 tagccttatg cattgttaat gcaactgttt gatcattttt ttattggtaa ttttagctgt 
000841 gattgttatt cctacctgat ctgctagcac cattcgttgg gcatgaaagt gctgctggtg 
000901 cctgcattca gtttttgtgt cattggcaat gtcatctttt ttgaaagaac tttttccttt 
000961 ttgaaagaac attggcaatg tcatcttgtt tgttcaattt actcccgctt tgtttgatat 
001021 ggagtattcc agtttgttat tttgattatg ccataaataa atttctgatt tcacagaatt 
001081 ggcacagaac atgagaagtt cggttttgaa gttgatacat tgcgtcctat aaagtacgat 
001141 cagatccgtg acatcctgaa tggacttgct gagaggtttg attgggacaa gatagttgaa 
001201 gaaaataacg ttatcggtct caagcaggta gtattcttct gttatttccg ctatgagacc 
001261 accttacatg acttagacca acaattaatg tggactgccg taattaattc taatggagaa 
001321 acaaacaaaa aaatgacagt ttgttctgac aattttagtt tatcccttaa ctcaggctac 
001381 ttatatggtt gcagggaaaa caaagcattt cactagaacc tggcggtcag tttgaactta 
001441 gtggtgctcc tcttgaaaca ttacatcaaa cttgtgctga ggtcaattca catctttacc 
001501 aggtaatgtg cagtgcatcc ctgtattaac ttcttgcttt atttgatttt cacttatgat 
001561 ttgcgcattg ccatgccata tatatcttca gtccgaaagt ttttttgcca gcagttgatc 
001621 caatccgaaa cgtctgttct tgtaggtcaa agcagttgga gaggaaatgg ggattggatt 
001681 tctcggaatt ggttttcagc caaagtgggc actgagtgac ataccaataa tgcccaaggt 
001741 agttttggcc ttagaccttg taaagcttta gcttttctat gaattcagtg ttgcctacat 
001801 atttaactta acttacgaga agggttccta taaattttaa tgcttcagat tgtttcttta 
001861 tagggaaggt acgaaattat gaggaattac atgcctaaag ttggctctct tgggcttgat 
001921 atgatgttcc gaacatgcac tgttcaggtg attatatgtt catgtactaa ttttggaatt 
001981 ccatcttaaa gaaacttgca aacttattgt tacttctcta aacaacttta cttgagtcat 
002041 gaaggttaat cttgacttca gttcagagca agatatgata aggaaattcc gtactggtct 
002101 tgcattacaa cctgtgggta cttttgttat cttccctgat catttacttt accccttgac 
002161 atgaacctgg tttattcatt taatggatcg ttgccattta acagattgca acagcaatat 
002221 ttgctaattc tcccttcaaa gaaggaaaac caaatgggta tcttagctta agaaggtgat 
002281 tgctttattg cttttaaaag tacattgttt tgttgtatga agttgccaac aacatcattc 
002341 atgatctgca gccatatttg gactgatact gacaacaacc gctcagggat gcttcctttt 
002401 gtgttcgatg actcatttgg gttagtatct ataattcata ccattcgacc ctcttccccc 
002461 acccagaaca ctggcaatgt gattgaaaac ctcattttgg ccaaagatat tttatacatg 
002521 aaatgaaggt ttccatgtaa ctgaaattct gattatagtt cgtttctttg atgcagattt 
002581 gagcgatatg tggactacgc attagatatc ccgatgtatt ttgtctatcg taataagaag 
002641 tacattgact gtactggaat gtcatttcgg gtctcttcct gtttctgtta ccttagtgct 
002701 tgtgctgtta tatgcagtag agctttggct atagaataca gaacttggtt attaactaga 
002761 ctaactggat ttatatttgt tttgcaggat tttatggtag gaaaactccc acaagctccg 
002821 ggggagctgc ctactttgaa tgactgggag aaccatctaa caacaatatt tcctgaggtt 
002881 tgcccttcaa tttgtatagc acgatcatca tggcatgttg acactgtatg cttaatgtaa 
002941 taactatttg ttcttttgta tttggcttgc aggttaggct gaagcgatat ctagagatga 
003001 gaggtgctga tggtggccca tggaggagat tgtgtgcttt gccagtattt tgggtttgtt 
003061 agcttactcc tttgcacttc ttttgtattt ctgtacagtt tgcagtgtgg tcattggtgt 
003121 caagtagaag taaacgcaag gagtttggac atgggtactg tagtaatgta tatcttccat 
003181 gttctatagg aagaattttg aaccagtttt ggaattggta tttgtataca ggttgggctg 
003241 ttgtatgatg aggaatcact gcaaagtatt tcggacatga cctctgattg gacaaatgag 
003301 gaaagagaaa tgctaaggcg aaaggtatct tgagttattt gtgctctctg tccctgccaa 
003361 gttatataat atactgttga tccataaata aacttttgtt ttgccttaca atcaccagtt 
003421 taacagaatt atataatctt ttttgtcaga ataatttgta aattagcaaa gtaacccagg 
003481 ttcggaagtt acaacatgct actagagtca ccttggcctt actgtatcta atttgattag 
003541 gtacctgtaa ccggtttgaa gacacccttc cgggatggat atgtaagaga tctagctgaa 
003601 gaaattctgc agttgtctaa ggttagtaac tttcttgaat gtacattctt ttataacacg 
003661 gagtgcatgc agattatagt aatgctcctt tttttgttat tccagaatgg attagaaaga 
003721 agagggtaca aggaagttgg tttcttaaga gaggttgatg cagtgatcag ttcaggtgaa 
003781 gatttcaaca ttccagcatc tcttttcatt gatgaagata tcaacatttt catggttttg 
003841 ctgcgctcta gataacaaat gaagaattta actctgtttt cagacaataa ttcgtagcct 
003901 actttgttgc aggagtgacc ccagctgaga ggctgctcaa tttgtacgag acgaagtggc 
003961 aacgcagcgt cgatcctgtc ttccaggagt tgttatactg atgctgagaa acctcttaca 
004021 cagcaaaact ggacagtctg tagatgtact cccccataca gaaaaaacct catatccatt 
004081 ctatttcatg cctcggcagc taatgtccgc catccgttct tcttgagcct gaagagggaa 
004141 aaataaccgc cgtgcagcaa ttcagcttca cggactcaat tgtttctgcc tcctggaaca 
004201 tttgaggtcg gaagcctttg taggtgctgt ctttgttggg gccttttaca acttccgatt 
004261 tccctcgtca acagggagat gggacaaacc actgtttgta ccagaccctc ttttgttcct 
004321 gatgattttt gtatgaaaaa taagcccatc tggtgcatga tggaaactat atatatatat 
004381 ggttccagaa aatgttggaa taagtatttg acaagcacgt ggagtgagtt ccatcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV915097 bags9n15 611
more... (Total Hit Count: 13 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ670946 whkv4d05 839
more... (Total Hit Count: 57 )
/rice/oryzabase