cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK102633     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os05g0455500 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 5
RAP - Location, Length 22,471,038 -  22,477,828  ( - );   6,791(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 22,471,038 -  22,471,533 ( - );   496 (bp)
Exon 2 Location 22,471,760 -  22,471,840 ( - );   81 (bp)
Exon 3 Location 22,472,006 -  22,472,076 ( - );   71 (bp)
Exon 4 Location 22,472,147 -  22,472,213 ( - );   67 (bp)
Exon 5 Location 22,472,350 -  22,472,418 ( - );   69 (bp)
Exon 6 Location 22,472,531 -  22,472,681 ( - );   151 (bp)
Exon 7 Location 22,473,070 -  22,473,145 ( - );   76 (bp)
Exon 8 Location 22,473,621 -  22,473,724 ( - );   104 (bp)
Exon 9 Location 22,473,831 -  22,473,927 ( - );   97 (bp)
Exon 10 Location 22,474,000 -  22,474,086 ( - );   87 (bp)
Exon 11 Location 22,474,171 -  22,474,257 ( - );   87 (bp)
Exon 12 Location 22,474,345 -  22,474,434 ( - );   90 (bp)
Exon 13 Location 22,474,560 -  22,474,637 ( - );   78 (bp)
Exon 14 Location 22,474,750 -  22,474,914 ( - );   165 (bp)
Exon 15 Location 22,475,053 -  22,475,203 ( - );   151 (bp)
Exon 16 Location 22,475,765 -  22,476,042 ( - );   278 (bp)
Exon 17 Location 22,476,227 -  22,476,388 ( - );   162 (bp)
Exon 18 Location 22,476,479 -  22,476,685 ( - );   207 (bp)
Exon 19 Location 22,476,788 -  22,476,859 ( - );   72 (bp)
Exon 20 Location 22,477,653 -  22,477,828 ( - );   176 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os05g0455500 Os05t0455500-02 213481 J033099M14 14596 LOC_Os05g38150.1 AK102633 35742 AP008211.2 255675924 BAF17637.1 113579274 NC_008398.2 297605017 NM_001062258.1 115464246 NP_001055723.1 115464247 O04226 P5CS_ORYSJ
Os05g0455500 Os05t0455500-02 213481 J033099M14 14596 LOC_Os05g38150.2 AK102633 35742 AP008211.2 255675924 BAF17637.1 113579274 NC_008398.2 297605017 NM_001062258.1 115464246 NP_001055723.1 115464247 O04226 P5CS_ORYSJ


Chromosome: 5 ,  position: 22,471,038 - 22,477,828 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 tctatccccc ctctactcgc ggctgcggcg gcaaggcggc gagacgtggg agagggattt 
000061 acaggtagag ggagagggtg gaggaggaga ggctgaggct aggaagcggt ttcgccatgg 
000121 cgagcgtcga cccgtcccgg agcttcgtga gggacgtgaa gcgcgtcatc atcaaggtga 
000181 tttttgtttg gccgctgggt cgcaggagtc gccgtcacgg attgaccttg atagatctag 
000241 tttccgagga ttcgtgcgcg tctgcttggg cgctgtttgc attgtttgcg ctcctcttct 
000301 ccgtattcgt gagattgttt ctggatcaaa tttaccgggc gagtgttttg ttcagagttg 
000361 aagactcgag agacgtttga tttgggattc tcgttgttag attatcagga gtggggcttt 
000421 gcttgggctt ttctgtggtt tacttgatgt gacggcctat gtcgaagttg ccaatctttc 
000481 gactctggta ggcatcatca tgggaaaact gttggctatt tcgctgcggg gcagcggatt 
000541 tctgtcagat gggaattggt gggtggaatg gcacagaaat agaaaagaga catagtatct 
000601 tatattggag cgttcggcaa atttctgtcc cttgcgatcg ctctcacaaa ttcgtgtttg 
000661 tttcatctgt gacacttttt atttgttcaa atcccatgct ttttccaatt tttttataaa 
000721 aaatatgcgg aactggtgaa ataatgtctg aattggaaag gtgatgagaa tcgaataatg 
000781 tagaatcaaa taccgttgct tttgagttta ggctttggaa aagcgtttag gctttagaaa 
000841 agcctagcag ttttgtggaa cctcaacgca ataccttcaa cacaagatgt accactgtac 
000901 cagtacataa taataatata ataataatgt ttttatctct gtgcggctaa ttcctttttt 
000961 gcatgacagg tgggcactgc agttgtctcc agacaagatg gaagattggc tttgggcagg 
001021 gttggagctc tgtgcgagca ggtaaaagaa atccattttt ttgatcttgt gagctgttct 
001081 gcaatggcta tgtagtgttg gatatgttgg caggtgccta accaaagaaa agtggcaatg 
001141 caggttaagg aactgaactc tttaggatac gaagtgattt tggtcacctc aggtgctgtt 
001201 ggagtggggc gacagcgact taggtaccgg aagcttgtca atagcagctt tgctgatctg 
001261 caaaagccac agatggagtt agatggaaag gcttgtgccg ctgttggtca gagtggactg 
001321 atggctcttt acgatatgtt gtttaaccaa gtgtgtttat tagtctggca ttcaacttca 
001381 acaaaaatga ataggttact ttttgtatct ttttgtaacc ttgaacttct tgcattgcag 
001441 ctggatgtct cgtcatctca acttcttgtc accgacagtg attttgagaa cccaaagttc 
001501 cgggagcaac tcactgaaac tgttgagtca ttattagatc ttaaagttat accaatattt 
001561 aatgaaaatg atgccatcag cactagaaag gctccatatg aggtatgtaa gtgtgtttca 
001621 taccatacat ctcctggaaa agtatgaaac ttcagttttt gcgtggtgct gctctttagc 
001681 tgctacttat tgttatactg cttgtatgcc tagccctagg gccttgtcag tgtatatgca 
001741 aatagccatg actttctaac cacactcacc tataattctt ttacaggatt catctggtat 
001801 attctgggat aatgacagtt tagcaggact gttggcactg gaactgaaag ctgatctcct 
001861 tattctgctc agtgatgtgg atgggttgta tagtggtcca ccaagtgaac catcatcaaa 
001921 aatcatacac acttatatta aagaaaagca tcagcaagaa atcacttttg gagacaaatc 
001981 tcgtgtaggt agaggaggca tgacagcaaa agtgaaggct gctgtcttgg cttcaaatag 
002041 cggcacacct gtggttatta caaggtaaac aatctattcc ctagagtata atggatatga 
002101 ctgctagcat caatcagatg cactccatta tatatgtatt gtcaaatttc ctgtcaagtg 
002161 caactagcaa tcagtaccat ctgcaggtgt tctggttgga ttatgtcatt gccagatttt 
002221 tttgcatgag tttatttcta atgtgaagat tattaagtcc tacaagacat ccaatcccaa 
002281 caactccact tggcctcaat tataacatct tgaatgagat gcagtccagt gcttgaatgt 
002341 tagcttcgtg gcattaatgg atgagctgtt ctgactttaa acacccctag tttacgctaa 
002401 aaaaatgatt tgttttgaga cctatatgac cttgcatgtt acgttgaaac tttgcttatg 
002461 atggttcaga catttaatgc ttgtaatgta ctgcacatca aattcaaatg attatcttgt 
002521 tgtgttgaag ctaattatca ctgagataac caagttcatg agttgcaagc tatttttatc 
002581 ttcttaatga atggagaaat agtttatttt tttctatcct tgaagtgggt ttgaaaatcg 
002641 gagcattctt aaagttcttc atggggaaaa aattggtact ctctttcaca agaatgcgaa 
002701 tttgtgggaa tcatctaagg atgttagtac tcgtgagatg gctgttgccg caagagattg 
002761 ttcaaggcat ctacaggtat atatctttgt caaatcatac gtaattcttg tccctctgtt 
002821 atgcccagtg gagttacaca ctatttcaag ttttagctca ctatttttgc tcacccgtga 
002881 tactagtctg ataccatatg ttcgtttgaa acagaatttg tcatcagagg aacgaaaaaa 
002941 gatattgcta gatgttgcag atgctttgga ggcaaatgag gatttaataa ggtctgagaa 
003001 tgaagctgat gtagctgcgg cccaagttgc tggatatgag aagcctttgg ttgctagatt 
003061 gactataaaa ccaggaaagg tggacccctc attttccttg ccaaattaac tgatttgtta 
003121 aatatctgac acttctcttt tcttatgtat gttgtcttgt ttaactcata ttatatttta 
003181 tgtttttgca gatagcaagc cttgcaaaat ctattcgtac ccttgcaaat atggaagacc 
003241 ctataaacca gatacttaaa aagacagagg tgaatgccag cctttttaat agaaactctt 
003301 tttaatagaa atctgctatg agatttcaca gaaattctag attctagatg atatatccat 
003361 agtgatttta acaaaaagat ttcccctttg ccaggttgct gatgatttag ttcttgagaa 
003421 aacatcttgc ccattaggtg ttctcttaat tgtttttgag tcccgacctg atgccttggt 
003481 tcaggtattt tgttctggca atgcactgtg ttccattctt ttccagaata catatacttc 
003541 taagtaacta attttgtgtc attgttgtta gattgcatct ttggcaattc gaagtggtaa 
003601 tggtcttctc ctaaaaggtg gaaaagaagc tatcagatca aacacgatat tgcataaggt 
003661 attatccttt tatcttgtgg ttaaaattgc tttctggttt tgctttaact gttgtaaaaa 
003721 acatcgattt attcttttct aggttataac tgatgctatt cctcgtaatg ttggtgaaaa 
003781 acttattggc cttgttacaa ctagagatga gatcgcagat ttgctaaagg tgtgtatgca 
003841 attctatatt ttcaaagcgt tgatactacc aatttggcta aacccgtaat acactgtgca 
003901 gcttgatgat gtcattgatc ttgtcattcc aagaggaagt aataagcttg tctctcaaat 
003961 caaggcgtca actaagattc ctgttcttgg gcatgctggt aaattctgtt tgaacttaag 
004021 ttcttaccac tcttatggct ttattggatg ttgagttttt ttttcttttt gctatttctg 
004081 acattccata tttccccact gcagatggta tatgccacgt atatattgac aaatcagctg 
004141 acatggatat ggcaaaacat attgtaatgg atgcaaaaat tgattaccca gcagcctgca 
004201 atgcaatggt atctatccag tttgctaccg tgtatagtat tcaaatagat tgcttttaca 
004261 gtttcagtta ctttttggag tatctttcac tgaatatttt ggacaatttc aaattctctt 
004321 ctaaccatga tgctctggtt gcaattcttc tctggcatct gaaaaatgca tttagtactg 
004381 ttgagattat tacagcccct ccacttctat ctcatgcaaa ctatttttat tgatagatga 
004441 tagttataac tgcacttttg aattgtttaa attgatttat aactacttat attgtgattg 
004501 cataatgctt attcttacaa agtagtaact tcctctttcc tttgtaagaa aatttagcta 
004561 catatcttga tagtcttcta ctgttttcag catgttgata attccacctt ataatttttc 
004621 tgaacatcat gtagccattt tttatattca gataacagcc tattttacat gtatgttctg 
004681 caggagacct tactagttca taaggatctt atgaagagtc caggccttga cgacatatta 
004741 gtagcactaa aaacagaagg tttgtttttc tactctctta tactatagaa acggctcccc 
004801 tctgaagcaa ttttgctcaa taccatcaca aacagttgca actttaaatt accaaccact 
004861 gtgatttaat ggtgataaat accattacaa acaacaaaaa atcttgaaaa tatatgaata 
004921 caaacgcgac ccttctctta tggcaacaat ttccaaccaa gtttgattgg ttacattgtg 
004981 attggttaac aagcatgtat atagaaacta cttcgatgct aaaagcaacc aaagtaacat 
005041 gacataatca cagatgtagt atgtttctgg atactggatt gttttttact tgtatataca 
005101 gggccatgat tttctccctg cttcttagat aatgctgtat atttcaggag ttaatattta 
005161 tggtggacct attgcgcaca aagctctggg atttccaaaa gctgtttcat ttcatcatga 
005221 gtatagttct atggcctgca ctgttgagtt tgttgatgat gttcaatcag caattgacca 
005281 tattcatcgt tatggaaggt acctaatagt tgtgactcct gtctccccct tatcccatag 
005341 tactagttgt tttcttaaac aaaaaatgag attcaatgta acccaaattt ccatattcta 
005401 tctgtttcag tgctcataca gattgtatcg tcactacaga tgataaggta gcagagactt 
005461 ttctacgcag agttgatagg tatgtttaaa cattaattcc cttattactt aatggttaca 
005521 ttatttgttc cctattgatg cacaattatt ttcctgtcaa cttatgatga acggatgttt 
005581 aactaatgtt ctgttctact tctcaatttg aacagtgctg ctgtatttca taatgcaagt 
005641 acgagattct ctgatggggc tcgttttgga ttgggtgctg aggtacttca aattttacat 
005701 gccatttacc tttctttctt aattgctgaa cttattggaa tatcttgaat aggttggcat 
005761 aagcacaggg cgtatccatg cccgtggacc agtgggtgtt gaaggtctct taactacacg 
005821 atggtatgga atcaatcgtc tctgttgcag tatctcatct tgccttttgt atggcaattc 
005881 accccgttta tgttagatat acatttatat gttgcttttg gatcgtatag aaggttaaaa 
005941 agtgacgtgt tttccttggt gatttttatg attaattttg atatgcagga tcttgcgagg 
006001 gcgtgggcaa gtggtgaatg gtgacaagga tgtcgtgtac acccataaga gtcttccttt 
006061 gcaatgaggc aagtaataca cttattgctt tgaatgtgtg atcttctcaa gatttccttc 
006121 ttcacagaaa gtgtatttac catgtttacc tactcaaatg atatgctata cttgcagttt 
006181 ggttaataaa aacagtttca gtcatatgat atgctatatg actctttctt atttttatat 
006241 gttatatatt agagaagtgg agataaataa actcatcctg aaactacttt gcaggtcaaa 
006301 tgctcctttt agcctgttca ggagtaggtg aatatccttt taagaatgga ttgactactt 
006361 tattttgtca tcttgtacaa gcatcttatt gcggcattcc gatggattat tgattttggg 
006421 ggtcccactt tcaaatgtga caccaaaaat aaattcatca gttctgagag caagattttg 
006481 gaggttcagc ttctccatgt aataagtaaa ttcagttctg agaacttgtg taccaacgcg 
006541 ctatgttgct tgtaatgagc gatactaaca tctgtgattg cacatatact aattgctatc 
006601 tccacttttt caatcatgct acgacatatc gccgtggatg catatatttg gtagcataga 
006661 ttcctcagct gaggctctac ttgagcttcc ccttttgttc tgataaacat cactaattgt 
006721 ggggttccgc tttcagttct gagaaggttc cgctttcaaa cgtgacacta caaataaatt 
006781 cagttctgag c

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK249154 FLbaf14g01 2818
more... (Total Hit Count: 49 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ826997 whatlal21h18 754
more... (Total Hit Count: 126 )
/rice/oryzabase