cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK101945     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0454200 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 22390507 -  22394216  ( + ) ;   3710(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 22390507 -  22391062 ( + ) ;   556 (bp)
Exon 2 Location 22391143 -  22391259 ( + ) ;   117 (bp)
Exon 3 Location 22391351 -  22391505 ( + ) ;   155 (bp)
Exon 4 Location 22392142 -  22392216 ( + ) ;   75 (bp)
Exon 5 Location 22392334 -  22392624 ( + ) ;   291 (bp)
Exon 6 Location 22393097 -  22393447 ( + ) ;   351 (bp)
Exon 7 Location 22393545 -  22394216 ( + ) ;   672 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0454200 Os05t0454200-01 212791 J033074L17 14571 LOC_Os05g38000.1 AK101945 43078 AP008211.2 255675924 BAF17632.1 113579269 NC_008398.2 297605017 NM_001062253.1 115464236 NP_001055718.1 115464237
Os05g0454200 Os05t0454200-01 212791 J033074L17 14571 LOC_Os05g38000.2 AK101945 43078 AP008211.2 255675924 BAF17632.1 113579269 NC_008398.2 297605017 NM_001062253.1 115464236 NP_001055718.1 115464237


Chromosome: 5 ,  position: 22,390,507 - 22,394,216 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tgcatatacc accaccacct cccccgtcct cctctcctcc accgcaaccg caaccacggc 
000061 cagccacggg ccaagcgagt cacgactggc acaacgaggc aaaaacacca ttgctacccc 
000121 cgaggcgtcc ctctcagcta gccctggcac ccgcaccacc tagcggcggc gccgtcgtgt 
000181 tcgtgtcggc caagtcgtca agaagctagc tagtcattgc cagtgggcgc attgtgctag 
000241 gggatggcga gaggaggagg aggaggagag gaggcggcgg aggaggagag ggaggtgagc 
000301 gaggcgctga cggcggactc gtcggccgac gaggagtgcc gccgcgggag cagcagctcc 
000361 agcgcaagct ccggggacgc ctccagcgag tcctactgcc cgcccgacga gtggcagaag 
000421 gtggccatca agacctgcgt gtcgtccgac ctcgtcgtcg tctcggccga gccggccaag 
000481 gagaagaagc cgccgccgcc gccgtcgtcg ccgcgcgtcg acgccgcccc ggcggacaag 
000541 caccaccggc cctcaggtac gtgcgccgcc gccgcaaatc cccagttcac tcctcccttc 
000601 caacacacgc ggttaaatta attgaattgg ctgcagagat ggagatgatg aaggagaggt 
000661 tcgcgaagct gctgctcggc gaggacatgt ccggcggcgg caagggcgtc tgcaccgcgc 
000721 tcgccatctc caacgccatc accaacctct gcggtaagtg ggaggtttcg aattgcacat 
000781 tgcgattaat gcggcggttt catggacacg gacatggagg ctgagctgag ttgcgttgct 
000841 gcagcgacga tatttgggca gctgtggagg ctggagccgc tgctgccgga gaaaaagacg 
000901 atgtggcggc gcgagatgga ctggctgctc tgcgtcagcg accacatcgt cgagctagtc 
000961 cccacatggc agacattccc cgacgggagt aagcttgagg tatactagta cttcacttcc 
001021 cctgacgaaa tttactctgc acttctgcag tagttaagct aggagtgata caggaattac 
001081 taggatcatc agtgcgggcc gttcgtgagc actgagtagc agatgcaaga tttaatttgg 
001141 cgtcctacgg atgaaccatg aagcgagtgc aaaattcgat ttgaatttta catgaacata 
001201 tggaccacaa aaagaaatta tatatagtca ttaaatacgt ggttagccgt ttggtactta 
001261 gtaatcccgt ttatattgaa acagttgggc gcgcgacgcc gtatttctga ggcccaaaag 
001321 agttaaggcc acatcaatgt gctgtccgtt tagttgtgtc cgatttgttt gtcctcaaat 
001381 tatccggtcc aaacgtgatc cattactact ctagatcaaa tggagatcca tcatttccca 
001441 cttgctgcat ctgtttacac caatctttct tctgtagtgt ccaactttat tcgacaatgc 
001501 aatgttcagg tctttttttg gcaaggaaat gttcagtttc ttttttttat gaactcttac 
001561 acagacacat tatataactt gtggtgagaa caatgataaa ctgactgtta ctctacatgt 
001621 ggattactac ttcagatcat gacaagcagg ccacggtctg atctctacat caatctgccc 
001681 gcactccgaa agctagacca catgctcctc gtaagtctga cgaactctat ctcggatcaa 
001741 cgatctgtcc atccatccga aaataaaaga tgaactagtg ctgtaataat gtgcatctcc 
001801 tgacgaaacg agcacatctt ctgccaggaa attctggaga gcttcaggga cccggaattc 
001861 tggtacgtcg accaggggat ttgcccgccg gaccgcgacg gcagcgcccc cttcatgcta 
001921 acgttccacc gccgcgacga gaagtggtgg ctgcccgtgc cccgcgtccc tcccggcggc 
001981 gtcggcgaga ccacgaggag gcagctcgag cacaagcgcg actgcgccag ccagatcctc 
002041 aaggccgcca tggccatcaa cagcaacgcc ctcgccgaaa tggacgtccc cgactcttac 
002101 ctcgactcgt tacccaaggt ccaaatcaat tctactacct gtagagaata ggagacggat 
002161 tctaatcaac cgcaactaaa tggttatgaa ttttttttaa aaaaataaca agatagatta 
002221 atatgtaata tattactcca caaacataca atttcgaatt taacttttac aagttataaa 
002281 aaataacaaa tttaattgca aatatacgta tactaattta agttttattt gttgtttttg 
002341 ttacaatttt tagaagttga aatttaactt acatgtttgt ggagtgatat attacatatt 
002401 gttctatctt tttaattatt tttaaaaaag ttttataatt atttagatga catgcattca 
002461 cttgggtgat taaaagagtt ttccgtagag aatactgtaa aaattatcag aaaaaagaaa 
002521 actacactaa tgctcatcat acatgaacgt ttgctgtttc ttgattctga cattgatgtt 
002581 tgattgtcag aacgggcgtg cgacgctggg cgacatcata tacaggtaca tcacgtcgga 
002641 ccagttctcg ccggactgcc tgctcgactg cctcgacctg tcgtcggagt accaggcgct 
002701 ggagatcgcc aaccgcgtcg aggcctccat ctacgtgtgg cgccggaggg gcacgtcggg 
002761 cgccgcgagc cgcgccggaa acaagtcgtc atggggcatc gtcaaggaca tgatcatgga 
002821 cacggagaag agagacgacc tcctcgccga ccgcgccgag ggcctcctca tgtgcctcaa 
002881 gcagaggttc cccggactga cgcagaccag cctggacacg agcaagattc agtacaacaa 
002941 ggttggtgaa tccatcattt gcagtttgca aatctcgcta tccgtgttga tggtgatcgg 
003001 gtttggatga actgatcgtg agatgactct ctcttcagga tgtggggaaa tcgattctgg 
003061 agagctactc gagggttctg gagagcctgg cgtcgaacat catcgcgcgg atcgacgacc 
003121 tgctgtacgt cgacgagcgg agcaggcagg cggagctgct tccaaccgcg ggcgccggga 
003181 gcggcaagat ctcttgcatg ccggccatgt cggcgtcgtc ggtgccggcg tacccggtgg 
003241 tgtccacctc gggcaccccg ccgccgtacg cgacggcgta cgccacgccg agcttctcgc 
003301 cggcgcagct gtcgagccca tccaacatcg ggagggcact gctggtcgac cggcggtcgc 
003361 acgacggccg agcgttcgac ggcagcatgg agttcatggg gatggcggtc agcaacgccg 
003421 tgttcgacct accgggcctg tgaatcgatc gatcacgggc cccgtgtcta gtgctttact 
003481 taccctcgcc tgtgtgcagt agttgtaatg ttgtatggcg tgatttcttc tcgggagggc 
003541 ggcctgtttt tgccgtttcg ccgtttcgcc gccctccagt tttatgatgt gttttgacag 
003601 tgcctttgtt aacttgctag tgttgtaaga gtgcttaagt tcgatgttgg tcggatggca 
003661 aaagagaacc atcgcgtttg tgcaaaccac agagttttct tggctgtttt

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs  
Acc. No. Clone Name Length
AV833185 bags22g10 408 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ304860 whyd8k04 650
more... (Total Hit Count: 4 )
/rice/oryzabase