cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK100483     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0319800 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 14,877,349 -  14,881,853  ( - );   4,505(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 14,877,349 -  14,878,015 ( - );   667 (bp)
Exon 2 Location 14,878,115 -  14,878,297 ( - );   183 (bp)
Exon 3 Location 14,878,378 -  14,879,135 ( - );   758 (bp)
Exon 4 Location 14,879,229 -  14,879,634 ( - );   406 (bp)
Exon 5 Location 14,879,741 -  14,879,866 ( - );   126 (bp)
Exon 6 Location 14,879,973 -  14,880,092 ( - );   120 (bp)
Exon 7 Location 14,880,205 -  14,880,531 ( - );   327 (bp)
Exon 8 Location 14,880,616 -  14,880,930 ( - );   315 (bp)
Exon 9 Location 14,881,039 -  14,881,176 ( - );   138 (bp)
Exon 10 Location 14,881,267 -  14,881,365 ( - );   99 (bp)
Exon 11 Location 14,881,456 -  14,881,853 ( - );   398 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0319800 Os05t0319800-01 211324 J023097B04 4872 LOC_Os05g25550.1 AK100483 21988 AP008211.2 255675924 BAF17100.1 113578737 NC_008398.2 297605017 NM_001061721.1 115463172 NP_001055186.1 115463173
Os05g0319800 Os05t0319800-01 211324 J023097B04 4872 LOC_Os05g25550.2 AK100483 21988 AP008211.2 255675924 BAF17100.1 113578737 NC_008398.2 297605017 NM_001061721.1 115463172 NP_001055186.1 115463173


Chromosome: 5 ,  position: 14,877,349 - 14,881,853 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acagatccaa caaacgccca aagaaaaagt cttttgagat acacaccaat gagcctaact 
000061 gactagctag cgatcgaaac accctgctcc agatcgatct ggcctagcta gggaccttgc 
000121 tgcggggggg caaccatgtc ggtctcactg gaggatctca agaaggagaa cgtcgacctc 
000181 gtcagtgttc ttcatcattc cgccaatatt gcgttcatcc gtgtgtgcgt gtgatccgtg 
000241 tgtcattgtg gcgttgttgg ttggttggtt ggttgcagga gagtataccg atccaggagg 
000301 tgttcgccgt gctcaagagc tcgccgcagg ggctcacctc cgccgatggc aacggccggc 
000361 tcgagatctt cggccgcaac aagctcgagg agaagaaggt cagaattcag aatcgtgtgt 
000421 tcgatcaaga acgagtttgt gtgttttggg tctcgcgtac gtataaaata tgtgaaattg 
000481 gcatgcagga gagtaagctg ctcaagttct tggggttcat gtggaatccg ctctcctggg 
000541 tcatggaggc cgccgcgatc atggccatcg ccctcgccaa cggaggggta cgcgtcgccc 
000601 gtccccgtcg ccgtcgcgtc agttgtgtgt gttttgaccg ccgtcgatct gacgcgtgca 
000661 tgcatgcgtg cgtgcagggg cggccgccgg actggcagga cttcgtcggg atcgtgacgc 
000721 tgctcttcat caactccacc atcagcttca tcgaggagaa caacgccggg aacgccgccg 
000781 ccgcactcat ggccagcctc gcgccgcaga ccaaggcacg tcgcgcgtgc gcagtgcgcc 
000841 acgccatgga cgaacactga cctatctgtg ctcgacggaa tgactgactg actgactgac 
000901 tgatcgatgg tcggtgcatg cagttgctga gggacgggaa gtggtcggag caggacgcgg 
000961 cgatcctggt gcccggggac atcatcagca tcaagctcgg cgacatcatc ccggcggacg 
001021 cgcggctgat ggagggcgac ccgctcaaga tcgaccagtc ggcgctcacc ggcgagtcgc 
001081 tccccgtcaa caagatgccc ggcgacagca tctactcggg ttccacctgc aagcagggcg 
001141 agattgaggc cgtcgtcatc gccaccggcg tccacacctt cttcggcaag gccgcccacc 
001201 tcgtcgacag caccaacaac gtcggccatt tccagaaggt atcatgcatg catccatccg 
001261 ccacttctcg tcggagaggt gccaactgct tgcttgctct gctcaccatc aatggtggtc 
001321 aggtgctgac ggcgatcggc aacttctgca tctgctccat cgcggccggg atgctgatcg 
001381 agatcatcgt gatgtacccg atccagcacc ggcagtaccg cgacggcatc gacaacctcc 
001441 tcgtgctgct catcggcggg atacccatcg ccatgcccac cgtgctgtcc gtgaccatgg 
001501 ccatcggctc gcaccggctg tcgcagcagg gcgccatcac caagcggatg acggccatcg 
001561 aggagatggc cggcatggac gtgctctgca gcgacaagac cggcacgctc accctcaaca 
001621 agctcaccgt cgacaagaac atgatcgagg cacgcacagc acacaccatt aatctttcag 
001681 ttttgccgtt aatttttttc cctatcgatc gagtagtagt tgtcatcaaa tcaaatcgcg 
001741 cactttggat ttggatttca gccgttcgtg aaggatctcg acaaggacgc gatcgtcctg 
001801 tacgcggcga gggcgtcgcg aaccgagaac caggacgcca ttgacgcctc catcgtcggc 
001861 atgctcgccg acccaagcga ggtaagtgaa gctcctcaag ctcgcacgga cacatcacac 
001921 aagctcccaa tttcctcttc ttctacaaat aaatctcacg acgtacgacg tgtctggaac 
001981 gtggcaggcc cgtgccggca tccaagaggt gcacttcatg ccgttcaacc ccgtcgacaa 
002041 gcgcacggcc atcacctaca tcgacaccaa agatggttcg tggcaccgca tcagcaaagg 
002101 cgcgccggag caggtcagcc ggccggccgg ccaccgtcag ctcagccatg aattctgtac 
002161 catttgcatt gcatcggtga atttgatctt gttggtgtgc gtgtgtgtgt gtggcttaga 
002221 tcatcgagct gtgccgtcta cgggacgacg tgagccggcg ggtgcacgcc atcatcgaca 
002281 agttcgccga ccgcgggctg cggtcgctgg cggtggcgag gcagaaggtg ccggagggga 
002341 gcaaggacgc gccgggcacg ccgtggcagt tcctcgccgt gctcccgctc ttcgacccgc 
002401 cgcgccacga cagctccgag accatccgtc gcgcgctcaa cctcggcgtc aacgtcaaga 
002461 tgatcaccgg cgaccagctc gccatcggca aggagaccgg ccgccgcctc ggcatgggca 
002521 ccaacatgta cccctccagc tctctgctca aagacggcga caccggcggc ctccctgtcg 
002581 acgagctcat cgagaaggcc gacggcttcg ccggcgtctt ccccggtacg ttcccagtga 
002641 ccttcacaag tacaagatgg aaaagcgaag ccatggcgca gaactgatga tgaactgatg 
002701 atgatgatga tgatgcagag cacaagtacg agatcgtgcg gaggctgcag gagaggaagc 
002761 acatctgcgg gatgacgggg gacggcgtga acgacgcgcc ggcgctgaag aaggcggaca 
002821 tcgggatcgc ggtggcggac gcgacggacg cggcgagggg ggcgtcggac atcgtgctga 
002881 cggagcccgg gcttagcgtg atcatcagcg cggtgctgac gagccgcgcc atcttccagc 
002941 ggatgaagaa ctacaccatc tacgccgtgt cgatcaccat ccgcgtcgtg ctcggcttcc 
003001 tcctcctggc gctcatctgg aggttcgact tcgcgccctt catggtgctc atcatcgcca 
003061 tcctcaacga cggcaccatc atgaccatct ccaaggaccg cgtcaagccg tccccgttgc 
003121 ccgacgcatg gcgcctccag gagatcttcg ccaccggcat cgtcctcggc acctacctcg 
003181 ccctcgccac cgtcctcttc ttctgggccg tccgcgacac cgacttcttc acggtgacca 
003241 ctcatcaccc aacctcgcac gcctcgccgc cgcgcgctct gacgccgtgt gtttgtgggc 
003301 agaggacgtt cggggtgcac ccgatcggag gcagcacgga ggagctgatg gcggcggtgt 
003361 acctccaggt gagcatcatc agccaggcgc tcatcttcgt gacacgcgcg aggagctggt 
003421 tcttcgtcga gcgcccaggg ctcctgctcg tcggcgcgtt cctcatcgcc cagctggtaa 
003481 gaagttcgtt agccgccgcc gccgcggcgc gcgcagtgac tcttctccgg cgactaatgg 
003541 cggcgaacgc acgcagatgg caacgctgat cgcggtgtac gcgaactggc cgttcgcgaa 
003601 gatgaagggc atcgggtggt cgtggggcat ggtcatctgg ctcttcagca tcgtcacctt 
003661 cttccccctc gacatcttca agttcgccat ccgctacttc ctcagcggca aagcctggaa 
003721 caacgccttc gacaacaagg taaacacgga gacacggatt ctaatcaccc gggtggacgt 
003781 ccacccattt atcgcatgtt aattatagga atgagtttgg tcgattgcgc gcgagcagac 
003841 ggcgttcgcg aacgagctgg actacgggaa gagcaagagg gaggcgcagt gggcgatcgc 
003901 gcagaggtcg ctgcacgggc tgcagcaggc ggagacgtcg acggcgctgt tcgacgacaa 
003961 caaggactac ctggagctgt cggagatcgc ggagcaggcg aagcgccgcg ccgagatcgc 
004021 caggctacgg gagctgcaca cgctcaaggg ccacgtcgag tcggtggtca agctcaaggg 
004081 cctcgacatc gacaccatcc agaaccacta caccgtctag ctagcaccat cgatctcaca 
004141 cgcatgaata ccatacatga tcgatgatgc tgctcgttag cttgataagt gagacaggat 
004201 attctttttt tttctttttt tttggcagct taatttaacg gggtcaggag actgtcttaa 
004261 tttggtcaga tgaataatgg gggtacgtag cttttgttgt tttaatggtt ttactttgga 
004321 gaggttgtag gtttgttggt acgtttgatt ggtcgaagac cagaataaaa tgagggctaa 
004381 tttagtactt tgtttgtgca tatgttgaag aatccatcag ccttttccta atgtttcaaa 
004441 ctaagtttta gcatgtacta attgttctta ggtaacactc tttttaattc cttgagggga 
004501 tattc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY856452 bastl30a06 487
more... (Total Hit Count: 21 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ657175 whgc9l14 672
more... (Total Hit Count: 39 )
/rice/oryzabase