cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK100412     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os05g0530400 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 5
RAP - Location, Length 26,441,426 -  26,443,865  ( + ) ;   2,440(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 26,441,426 -  26,441,559 ( + ) ;   134 (bp)
Exon 2 Location 26,441,803 -  26,442,271 ( + ) ;   469 (bp)
Exon 3 Location 26,442,509 -  26,443,865 ( + ) ;   1,357 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 Tigr ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os05g0530400 Os05t0530400-01 J023087K12 211252 J023087K12 13788 LOC_Os05g45410.1 AK100412 29540 AK100412.1 32985621 BAG94592.1 215713455 NC_008398.2 297605017 NM_001062662.1 115465054 NP_001056127.1 115465055 Q93VB5 HFA4D_ORYSJ


Chromosome: 5 ,  position: 26,441,426 - 26,443,865 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acggctgcac gccctgcacc cgttgccacc accaccgcct tctccgccgc gccgcctcct 
000061 ctcgcgtctc ccgctcgtgc agggcgcgcg tcgtcgggcg agctgctgcc gtctccgtgg 
000121 ccgtggctga tcaggtgaga attgagaaag gttgtgagtt ttcgcgtggt tgtctggttg 
000181 attcgatcgt gccggcgcgc cttggcatgg caggcaagat tgtatcagga gataatgaaa 
000241 aaacatacac tgggctttct ttttcttaat ttctttgcat tctttgcttc gacggctatg 
000301 gttgcttgaa ctgttcaggc ggcgcctttg tgtatacacg tgcttgtatg tgatgctctg 
000361 gtcatttctt tttgcagaac tagttggcgt tcgatcggaa agtcgctgtc ttttggcgac 
000421 tcggtgagaa tttgcgccgc ggttcaatgt gaaaaatttt ggcccgtggc gagttggatt 
000481 tggcgccgag tccattcagg tggttaagac ttgttcgtgg gagagcgaag ctgcgcgcgt 
000541 taagaccggg ctccgttctt gcatcgtgca gagcagctgc tggtttgaga attgagaggc 
000601 gcggttgaca tggagagttc caacctgggc ggcggcggcg gcggaggcgg cggcggtggg 
000661 ccgccgccgt tcttgatcaa gacgtacgag atggtggagg acgcggcgac caaccacgtc 
000721 gtgtcgtggg gccccggcgg cgccagcttc gtcgtgtgga acccgctcga cttctcccgt 
000781 gacctgttgc ccaagtactt caagcacaac aacttctcca gcttcatcag gcagctcaac 
000841 acctacgtga gtcacaaaca caatcccctt tgcttcttga aacgaaacaa acattgcaac 
000901 aatcatgtgc tactgtttgc ttgtaaatta gtagttcctt gttcttggtt tgtttggatg 
000961 attttaccat tgacacagca gccggtttta tatagcctat ttgattttct gtaaaatagt 
001021 tctttattct tggttggttt gaccgtagct gaattttgac ttcaattggc atcttccttt 
001081 cagggtttcc gaaaaatcga tcctgagaga tgggagttcg caaacgagga tttcataaga 
001141 gggcacacgc accttctgaa gaacatccat cgacgcaagc ccgtgcacag ccactccctc 
001201 cagaaccaga taaacggacc actcgccgaa tcggagaggc gcgagctcga agaagagatc 
001261 aaccggctca agtacgagaa gagcatcctc gtcgcggacc tccagaggca gaaccagcag 
001321 cagtacgtga tcaactggca gatgcaggcg atggaaggca ggctagtggc gatggagcaa 
001381 cggcagaaga acatcgtggc ctccctgtgc gagatgctgc agagacgcgg tggcgccgtg 
001441 tcgagctcgc tgctggagtc cgaccatttc agcaagaaga ggagggtccc gaagatggat 
001501 ctcttcgtcg acgattgcgc ggcgggcgaa gaacagaagg tgttccagtt ccagggaatt 
001561 gggacggatg caccggccat gcctcccgtg cttcctgtga ccaatggtga ggcttttgac 
001621 agggttgagc tgagcctggt ctccctggag aaactcttcc agagagcaaa tgatgcttgc 
001681 acagctgctg aagaaatgta ctcccatggt catggtggta ctgaacccag cactgctata 
001741 tgtcctgaag agatgaacac tgctccaatg gagacaggca tcgatcttca gttaccagct 
001801 agcctccatc ccagctcacc caacacaggg aatgcccatc tccatttatc cactgaactc 
001861 acagagtctc caggttttgt gcagagtcca gagctgccaa tggcagagat tcgtgaagat 
001921 atccatgtga caagataccc aacacaagct gatgtaaatt ctgagattgc ctcctccact 
001981 gatacttcac aagatggcac gtcagaaact gaagcttcgc atggaccgac caacgatgtg 
002041 ttttgggagc ggttcctcac agagactcca cggtcatgtt tggatgagtc agaaagacaa 
002101 gagtctccca aggacgatgt aaaagcagaa ttaggctgca atggcttcca tcaccgggag 
002161 aaggttgatc agatcaccga gcaaatgggg caccttgctt cagccgagca gactctgcat 
002221 acctgatgca gtaataccat ttgcgcggat tcatagttcg tgtgtaaatt agcgaagatg 
002281 taaattatag cttagatcgg attagaggct tgcgtgttac tttacagatt tcaacctttt 
002341 attagattac aataggtctt tcacaattta tgattctgtt ctatccgctg actactgtgc 
002401 ataaattttt tttagtagac catatccatt tttgtactcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AV834862 bah18d15 445 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ901458 whthkles25c06 674
more... (Total Hit Count: 5 )
/rice/oryzabase