cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK100233     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0423400 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 20,817,535 -  20,819,837  ( + ) ;   2,303(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 20,817,535 -  20,817,819 ( + ) ;   285 (bp)
Exon 2 Location 20,817,956 -  20,818,022 ( + ) ;   67 (bp)
Exon 3 Location 20,818,119 -  20,818,177 ( + ) ;   59 (bp)
Exon 4 Location 20,818,344 -  20,818,446 ( + ) ;   103 (bp)
Exon 5 Location 20,818,574 -  20,818,603 ( + ) ;   30 (bp)
Exon 6 Location 20,818,716 -  20,818,760 ( + ) ;   45 (bp)
Exon 7 Location 20,819,401 -  20,819,837 ( + ) ;   437 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os05g0423400 Os05t0423400-01 211071 J023051B10 13692 LOC_Os05g34940.1 AK100233 4742 AP008211.2 255675924 BAF17504.1 113579141 NC_008398.2 297605017 NM_001062125.1 115463980 NP_001055590.1 115463981 Q40703 MADS4_ORYSJ
Os05g0423400 Os05t0423400-01 211071 J023051B10 13692 LOC_Os05g34940.2 AK100233 4742 AP008211.2 255675924 BAF17504.1 113579141 NC_008398.2 297605017 NM_001062125.1 115463980 NP_001055590.1 115463981 Q40703 MADS4_ORYSJ
Os05g0423400 Os05t0423400-01 211071 J023051B10 13692 LOC_Os05g34940.3 AK100233 4742 AP008211.2 255675924 BAF17504.1 113579141 NC_008398.2 297605017 NM_001062125.1 115463980 NP_001055590.1 115463981 Q40703 MADS4_ORYSJ


Chromosome: 5 ,  position: 20,817,535 - 20,819,837 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 accctcttgt ttcttcgaga gcgaggtgaa gatttgtttc ttggtttgtg ttcttggagt 
000061 ggaggaggag gaggagttgg atatggggcg cggcaagatc gagatcaaga ggatcgagaa 
000121 ctcgacgaac cggcaggtga cgttctcgaa gcgccgcgcc gggatactca agaaggcccg 
000181 cgagatcggc gtgctctgcg acgccgaggt cggcgtcgtc atcttctcca gcgccggcaa 
000241 gctctccgac tactgcacgc ccaagaccac gtccgtgttt cccccgtctc tctctctcct 
000301 cttccttgtt tttttttctt ttcttctttt cttgctctta atttcagtgt ttcctgagat 
000361 atgcatgttc tctttgcatt gtgtttggcc tttaatttga tttgtttttt tggcgtttta 
000421 ggctgtcaag gatcttggag aagtaccaga ccaactccgg gaagatactc tgggatgaga 
000481 agcacaaggt gcgtgctttt ctggattatt ttttttccaa acttttattc ctacaaaatc 
000541 gaatagaaat gcttaaaaaa atgtattctt ggaaaacgtt tcagagcctc agcgcagaga 
000601 tcgatcgtgt caagaaggag aacgacaaca tgcagatcga gctcaggcta gtgtcccaac 
000661 ttattactat catgcatctt tatttctttc acttcctatt aattaaagag acaactataa 
000721 atcacccatt gtagcgtttt cagctttaga ttttgctctt gttggggaca tcagggatgg 
000781 tggtgatttg tcaagcctgt tccatgttgc aggcatatga aaggggagga tctgaactcc 
000841 ctgcagccca aggagctgat cgcgatcgag gaggcgctca acaacggcca ggccaatctg 
000901 cgggacaaga tggtgattac tgtctttgaa gcttgatgtt tacttcagca tggcatgcag 
000961 agattgcaag tgccgcatct cttctttttc agagagagtt tttgtttctg atgtcacctt 
001021 tgtttccatg atgttgcaga tggaccactg gaggatgcat aaaaggaatg tatgagctct 
001081 agatatctgg atgattcttg tgcttctttt gtggatgatg aagtcaatat cttttgcaag 
001141 ctctgatcac tcacctcaca tgtctctgtg ttcggcttca ggagaagatg ctggaggacg 
001201 agcacaagat gttggctttt agggtggtaa tttccttcag agtaacttgt ttttctattg 
001261 aactttcact tgaaaaattc cttgtgttct catttctatt tctaaaaacc atctgaaatt 
001321 gaggacaaat accatctgat ataactgctc taactgttca actaggttcg ataataagtg 
001381 acccttcgta gttgcgccta tcactacttt agctattttt cagtgccatg ctcattctaa 
001441 tgcggtcact tagatcactg gtcaatattc aatcagaacc attctacgca acaaatctct 
001501 agactaacta cccctgcatt cagaattcat atagcgattg aaaattgaac tccgtgcacg 
001561 gtagtagtag tagtcagatc tattgtttct aatcaattgc tatatggatt cagaatgcag 
001621 gtgtagtttg ttcatatatg acaaaacatc ctattgaatc ttgaccagtg atctaattga 
001681 ctgctccatt agatgttatc atctatgaac aaactacccc tgcattctgg atccatatag 
001741 caattgatca gaaatgccag atctgattac tacttccctg cacagagctc aaacctcagt 
001801 gagggaagct ttactgaaag aagcctgaaa gctgagagtt cactgagctc ctccccgtgt 
001861 tttcagcacc agcaggaggt cgagctgagc ggcggcataa gggagctgga gctcggctac 
001921 caccacgacg acagggactt cgcggcctcg atgccgttca ccttcagggt gcagcccagc 
001981 caccccaacc tccagcagga gaagtaggct gctgagcact gccaatttgg ctgaacctcc 
002041 tgcttgctag ctttgcattt cctcatgcgc tgctagatgt atctgtggtt tctctcatgc 
002101 ctgtctgaat gaactcacac tgatgagagg gtgtcagttg ttttgtgctc ctcccagcat 
002161 tagcactcag aattcagaaa tgactcaatg tcagttgctt ttgtgcttct cccagcatta 
002221 gcactcagaa ttcagaaatg actcaatgtc agttgctttt gtgcttctcc ctgcttgttt 
002281 aattagccac tgttcttgtt tcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ653888 whgc15g10 695
more... (Total Hit Count: 91 )
/rice/oryzabase