cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK100216     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0170000 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 4,195,283 -  4,200,366  ( - );   5,084(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,195,283 -  4,195,968 ( - );   686 (bp)
Exon 2 Location 4,196,105 -  4,196,233 ( - );   129 (bp)
Exon 3 Location 4,196,607 -  4,196,756 ( - );   150 (bp)
Exon 4 Location 4,196,844 -  4,196,909 ( - );   66 (bp)
Exon 5 Location 4,197,186 -  4,197,230 ( - );   45 (bp)
Exon 6 Location 4,198,084 -  4,198,164 ( - );   81 (bp)
Exon 7 Location 4,198,264 -  4,198,345 ( - );   82 (bp)
Exon 8 Location 4,198,633 -  4,198,704 ( - );   72 (bp)
Exon 9 Location 4,199,535 -  4,199,635 ( - );   101 (bp)
Exon 10 Location 4,199,752 -  4,199,868 ( - );   117 (bp)
Exon 11 Location 4,199,991 -  4,200,366 ( - );   376 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0170000 Os05t0170000-02 J023045H21 211054 J023045H21 13685 LOC_Os05g07790.1 AK100216 438 AP008211.2 255675924 BAF16680.1 113578317 NC_008398.2 297605017 NM_001061301.1 115462332 NP_001054766.1 115462333


Chromosome: 5 ,  position: 4,195,283 - 4,200,366 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gctggattcg atgggcgctc ggtgagatcc gaatccccca cggtggtcgc cggagatgaa 
000061 gccgccgcgg aggtggatgt acgggcgggg cggcgggaag gggaagccgg cggggctgct 
000121 gctgctgggg gtgttcctct gcttgtcggt ggtgctgctg ctgctgctgc acggctcgtc 
000181 cccgtcgctg gagggcgagg ggaggaagcc tgaggcggtg gaggcggcgg ggggaggggg 
000241 agaggaggag gaggtggcgg tggcgcgggc ggaggtggag gaggcgccgc tgccgccggg 
000301 gaacgcgcgg ctcgccttcc tcttcatcgc ccgcaaccgc ctcccgctcg acctcgtctg 
000361 ggacgccttc ttccgcgtaa gcgcgcgcct cgcccggatc tcccccttcc tctcgctctt 
000421 gctcggatgg ctcccaattt cagcgaatgc tggtttaatt tgaatcctga ttgcattgcg 
000481 ttttttgggg gtgagtaggg tgacaaggaa gggagattct ccatcttcgt gcactcgcgg 
000541 ccggggttcg tgctcacccg cgccaccacc cgatccggct tcttctacaa tcggcaggtc 
000601 aacaacagcg tccaggttcg cgacctcgtc cccacttccg ttggcaatgt gatgtgatcc 
000661 gtcggtagca gcatccgttg cagtccacac tgggttcctg atgagttggg catgtgtgat 
000721 ttgtccttca ggtggattgg ggggaggcga gcatgatcga ggctgagcgt gttctactcg 
000781 cccacgcgct caaggacccc ttaaacgagc gcttcgtgtt cgtctccgac aggtatggat 
000841 tatggaatta tgatgtgtgc tagtgtgtat gcttggataa agtattactg actttagata 
000901 ctaagttgat tggcacaaaa ttttggcaat gcccaaaaaa tttagtcatg tgttctgttt 
000961 atagccaaaa attaagcact actaaattat ttgtcttggt tgaatagcaa atgcaagttt 
001021 agtagaagca aatgaatgcc tagccagttt ttgccagaaa atttggcaat ggccagttct 
001081 tgccattgcc aaaaaaattg gtaaggctat gaaccaaaac aagccctaac tgcaatctgt 
001141 gttggcttaa tctcttgttc agcacaatgt gttgtttcta ggttctgatc ataatgaatt 
001201 aagggaatgt tcctgaacat aatgatatgt ccttacattt ttataaatgt ggactgttat 
001261 ctagtaaaga ttgtttgttt tttttaatca tcgtttggct aactaatttt tttttccaat 
001321 atgcaatgct cagatgataa gtagtttctg tccgcgattt taagctcatg ctaaaaatgt 
001381 ggtgcgatag cagtcctcaa tcttaaattc catggaaatg aatcttgtgt tatactgtta 
001441 gtctgtttct attaagttta acgggactcc acatgaagct gtactgaatt taccagatgc 
001501 cttggtgcaa ttttaggtat cgtttacacg gttgtttttc tgacagctcc aaatttgaac 
001561 ttagtactac acatcttttt ttataatctt acaaagctcg ttgttgcacc attttggatc 
001621 ttaattggat tcatgcttac taggatcttc tctctctgcc agctgtgtgc cattgtacaa 
001681 cttcaactac acttacgact acataatgtc ttcgtcaacc agttttgttg acaggtatag 
001741 gcatcacaat ttcgtgttgt gtttcctgat gatggttaag acttaagaat gaattctgag 
001801 ttcatgacaa gtatcagcta gtaactatga atgttaaaga aaagaaagaa aaaaaatcat 
001861 gttagccttt ctcattttcc attatctaag tatttccatg taccttgagc ttcaaaatgg 
001921 ttcctgtagc aaactgcaga tttgcagctt aaagcacctt tcatttagct tgtataatat 
001981 cctgggtatt aacagcatcc aattgcatat gctggggaca gttttgctga tacaaaagcg 
002041 ggtcggtata atcccagaat ggacccaatt atcccagtgg aaaattggag aaaaggctcg 
002101 caggtacctt tctgtttcta ttgatgaaag ataggagaat tttgcttgaa ctgtgtaaca 
002161 gttagttttg ataccttatc accattcatt tgtgccatac agtgggctgt gttaacaaga 
002221 aaacatgctg aagttgtggt tgaagatgaa gaggttttgc cagaattcca gaagcattgc 
002281 agggtatgtg actcaatatt tatgcactct atgcagataa atttcagtat tgtataacat 
002341 agtttactca tgatcataac tgaccagtga actttttcac cttgtacctt tcatcaaatt 
002401 aaaatcagga taacagaagt tgaaaatttg aatattatca atatttactt ttttatgaca 
002461 gttttttgca ttcgcaagtg aatgtgctct caagataatc aacataggac acaaagaaac 
002521 ttgtagattt atgtaaactg ccacgtatgg tactgacatt ctgacaatgt ttacgacaat 
002581 gcatgatatc agtgatttat tttattttat tttttaaacc tttttaattt ttatttttaa 
002641 aaataaatca ttcgaaaact tatttccaag atctaaacct tttggccgta gttggttggc 
002701 aaaacaacat tgccacaccg gtctggctgg catggcagcg ttgtcttgcc acaccaccgt 
002761 ggctggcagg acaaaactgt cacgcccgtt gcgggtgacg tgtcagtgtt gttttgtcac 
002821 accaggcagg ctagcttggc taaaaggttc agattttgga aatattgtaa aattgtcatg 
002881 cccattgcgg gtgacgtgtc agtgttgttt tgtcacgcca ggtgggctag cttggccaaa 
002941 aggttcagat tttaaaatta aaaaggttaa aaaaataaaa taattcgata ctagtacctt 
003001 tgccaaatga atagaagatc caccggattt ttctatatca tcaacccaag ttacttaact 
003061 catgtctctt tcctatcaat tagcttagag ttgtctattc ttgttcctat taaatgtacc 
003121 tttttattta ttgcagagaa ggcccttacc agagttctgg cgggactggg atcgtcctat 
003181 tgtaagtgaa agtctccaat aaaatactga actgtcactt agcttgttga acttgctttt 
003241 atgtgtttat ttttgaactg cagctggcac attgagtata ataatcacaa ctcttgtgct 
003301 atttcttgta ctccataaaa agcttaatta acagaattat tatctatggc ttcaaaattt 
003361 accactgaac tctatatctc tatctaattg ctctactgtt ccagaacaaa gtttaattag 
003421 taattctgtg agactaaatg ctgctcattt tatccagcct gcggaggcat ggaaggcaca 
003481 taactgcata ccagatgagc actatgttca aacattgctt gcagtaagtc aacaatcatt 
003541 tacagtatcc cttgcagctg ttcctcctca caaagacatc tgaccgttca attattttta 
003601 tcgaatgcag caacatggtc ttgaagaaga gcttacacgg aggtcagtta cacacagtgc 
003661 gtgggatcta tcatcttcta aagatcgtga aaggcgtgga tggcatcctg taacatacaa 
003721 aatctcagat gctactcctg cacttgtaaa atccataaag gtatatgttt ctttgcaatg 
003781 gcacattttt tgttacctga aagtggtgat tatatagtat gtacatttaa aaaggaaatt 
003841 aagagaggct ttactttttt ttcttttatt tgaaaattct gtcattatta aaatatttaa 
003901 gtacaaagca acaaccaagg tgaatgttgg aacctctgtt gggtaatggc agacgctatc 
003961 aattcatctg tttcaaagct ttaacaaatg tcagtttgga aatgtgttgc gtctgataag 
004021 gaatgtcagc ttttgtttgt catgtataca gttctgccaa aacaagctgc ccgtacgaaa 
004081 tgcacatgac attttctaac tattcactga gtacctattt gttgaatttt taggatattg 
004141 ataatatata ttatgagact gaaaatagaa aggagtggtg tacaagtaat ggaaaaccag 
004201 caccttgctt cctttttgca aggaagttta cacgagcagc tggtctgaag cttcttgatt 
004261 tagtaagttc aggaccttta gcttttcatt tcatatcgtg atgcaaacac aggcattcct 
004321 aaacctaatg tattgtctaa cgaaatcaca ttgtgatttg cttatagttt ttgctctctc 
004381 caaatttccc ttttgcagtc tttgatagca gcaaatggcg catctaccat gtaaagtttc 
004441 tccgtcaaaa gcagaatact gccagcttgc acatacgtaa aggaaagtgg tggaggggac 
004501 agaagataac agcgaatttt ttttgggcat cttcattaca atttgttgca ctctgaaaag 
004561 ggacataggt gttctaaagc aataaagttt gtttctttta gcacctaggt tagtacatat 
004621 gttaacccac tacttagcat tataactgta actgtaagca accacctgca gttggattgg 
004681 caagaatcac ctcagttctt ttcacgacaa attccttttt caaatttata gagaattggc 
004741 atgtcttata cttgcatgca tactgtagtc attccatcga aggcaatgcg tgatctggtt 
004801 acccaaacat taatcaagca tgttgaactc aggaactgcg tatttcacat ggatttatac 
004861 tctcatagca gatctgccga tcaacatgca tgtttggcat tctgttccat cagaaacatg 
004921 ggaccctagt gccgtggcaa tggttatccc ctacccttag gacctttgga cttttgatgg 
004981 cctcaattta aaactgtgct ggctggagat gcagcgatgg tgtagccaat tcaatgattc 
005041 tcatcattgt tgttcctcca attgatgtgt tacttcttgt actc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AK249423 FLbaf26g07 510 view details
/rice/oryzabase