cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK099106     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0319800 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 14,877,468 -  14,879,278  ( - );   1,811(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 14,877,468 -  14,878,015 ( - );   548 (bp)
Exon 2 Location 14,878,115 -  14,878,297 ( - );   183 (bp)
Exon 3 Location 14,878,378 -  14,878,551 ( - );   174 (bp)
Exon 4 Location 14,878,621 -  14,879,135 ( - );   515 (bp)
Exon 5 Location 14,879,229 -  14,879,278 ( - );   50 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Os05g0319800 Os05t0319800-02 205457 J023028O04 4872 LOC_Os05g25550.1 AK099106 6065
Os05g0319800 Os05t0319800-02 205457 J023028O04 4872 LOC_Os05g25550.2 AK099106 6065


Chromosome: 5 ,  position: 14,877,468 - 14,879,278 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 tgtcgacgag ctcatcgaga aggccgacgg cttcgccggc gtcttccccg gtacgttccc 
000061 agtgaccttc acaagtacaa gatggaaaag cgaagccatg gcgcagaact gatgatgaac 
000121 tgatgatgat gatgatgatg cagagcacaa gtacgagatc gtgcggaggc tgcaggagag 
000181 gaagcacatc tgcgggatga cgggggacgg cgtgaacgac gcgccggcgc tgaagaaggc 
000241 ggacatcggg atcgcggtgg cggacgcgac ggacgcggcg aggggggcgt cggacatcgt 
000301 gctgacggag cccgggctta gcgtgatcat cagcgcggtg ctgacgagcc gcgccatctt 
000361 ccagcggatg aagaactaca ccatctacgc cgtgtcgatc accatccgcg tcgtgctcgg 
000421 cttcctcctc ctggcgctca tctggaggtt cgacttcgcg cccttcatgg tgctcatcat 
000481 cgccatcctc aacgacggca ccatcatgac catctccaag gaccgcgtca agccgtcccc 
000541 gttgcccgac gcatggcgcc tccaggagat cttcgccacc ggcatcgtcc tcggcaccta 
000601 cctcgccctc gccaccgtcc tcttcttctg ggccgtccgc gacaccgact tcttcacggt 
000661 gaccactcat cacccaacct cgcacgcctc gccgccgcgc gctctgacgc cgtgtgtttg 
000721 tgggcagagg acgttcgggg tgcacccgat cggaggcagc acggaggagc tgatggcggc 
000781 ggtgtacctc caggtgagca tcatcagcca ggcgctcatc ttcgtgacac gcgcgaggag 
000841 ctggttcttc gtcgagcgcc cagggctcct gctcgtcggc gcgttcctca tcgcccagct 
000901 ggtaagaagt tcgttagccg ccgccgccgc ggcgcgcgca gtgactcttc tccggcgact 
000961 aatggcggcg aacgcacgca gatggcaacg ctgatcgcgg tgtacgcgaa ctggccgttc 
001021 gcgaagatga agggcatcgg gtggtcgtgg ggcatggtca tctggctctt cagcatcgtc 
001081 accttcttcc ccctcgacat cttcaagttc gccatccgct acttcctcag cggcaaagcc 
001141 tggaacaacg ccttcgacaa caaggtaaac acggagacac ggattctaat cacccgggtg 
001201 gacgtccacc catttatcgc atgttaatta taggaatgag tttggtcgat tgcgcgcgag 
001261 cagacggcgt tcgcgaacga gctggactac gggaagagca agagggaggc gcagtgggcg 
001321 atcgcgcaga ggtcgctgca cgggctgcag caggcggaga cgtcgacggc gctgttcgac 
001381 gacaacaagg actacctgga gctgtcggag atcgcggagc aggcgaagcg ccgcgccgag 
001441 atcgccaggc tacgggagct gcacacgctc aagggccacg tcgagtcggt ggtcaagctc 
001501 aagggcctcg acatcgacac catccagaac cactacaccg tctagctagc accatcgatc 
001561 tcacacgcat gaataccata catgatcgat gatgctgctc gttagcttga taagtgagac 
001621 aggatattct ttttttttct ttttttttgg cagcttaatt taacggggtc aggagactgt 
001681 cttaatttgg tcagatgaat aatgggggta cgtagctttt gttgttttaa tggttttact 
001741 ttggagaggt tgtaggtttg ttggtacgtt tgattggtcg aagaccagaa taaaatgagg 
001801 gctaatttag t

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ657175 whgc9l14 672
more... (Total Hit Count: 7 )
/rice/oryzabase