cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK073928     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0301600 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 13,565,349 -  13,570,084  ( + ) ;   4,736(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 13,565,349 -  13,565,519 ( + ) ;   171 (bp)
Exon 2 Location 13,567,285 -  13,567,356 ( + ) ;   72 (bp)
Exon 3 Location 13,568,334 -  13,568,449 ( + ) ;   116 (bp)
Exon 4 Location 13,568,547 -  13,568,714 ( + ) ;   168 (bp)
Exon 5 Location 13,569,514 -  13,570,084 ( + ) ;   571 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0301600 Os05t0301600-01 210113 J033073L20 11882 LOC_Os05g23610.1 AK073928 6656 AP008211.2 255675924 BAF17049.1 113578686 NC_008398.2 297605017 NM_001061670.1 115463070 NP_001055135.1 115463071
Os05g0301600 Os05t0301600-01 210113 J033073L20 11882 LOC_Os05g23610.2 AK073928 6656 AP008211.2 255675924 BAF17049.1 113578686 NC_008398.2 297605017 NM_001061670.1 115463070 NP_001055135.1 115463071


Chromosome: 5 ,  position: 13,565,349 - 13,570,084 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gtttctgacc aatcccctct gctctctcct ctcctctctc cctctcccgc gatctgcaga 
000061 gccgcttgtg cccccgcgcc gccttccccc cccccccccc cctccccccg ccgtcgccgg 
000121 aggcctccgt cgtgcgcgcg gccggcgagg ccgctcgagt cgaaccggaa ggtacctatt 
000181 cctctctctc gcagctcgta gcccccctct cccccatccc tcctccttcc gcgccacttc 
000241 atcagcgggg gcggtgtgga ctggagatcc cccatcccgg cgtggattgg attcgattgg 
000301 tttgatctcg tttctctccc tagcctgtag ctttttcttt tgttagaaac ggaaaacgga 
000361 ggattaaacc ccatatgccc ccgcgtgtta ggtttaggtc tgcctgcacc tggattcatc 
000421 gttctagggt gggggattta tgatcgagta ccaaaggatt tatgatccgc ttgtggtttt 
000481 tcgccttgcg ataaagctga acacagttga caataattct ctctgtagag atagtcgatg 
000541 ggcgatcgta atcctgacta gaaaatttga ttacactgcc atcccgcact acttgtggtt 
000601 ctatataata aatgaattcg ttgctcgtca ttgcgccgtt gctcattctc cattcctgag 
000661 cacgcacaaa ctattgcgca ccatccttgt agctggtggg tataatatat gcgtattgat 
000721 gcaagtgtgt ctagtggcca tcgctaccaa ggaaaatcag tgatcactag gtcatggctg 
000781 acacgattca gcagtggagc tgtgttgttg attaagaccc catgaaaagt cagttaacct 
000841 aagatagtta ttactaatgg ttcccttgta acaagaattg gggatggtac ccagtgtgcc 
000901 cccacatcca ttgatgcagg ccaaattgtt tgtgggctgc aaaacctttc tcttatcata 
000961 acagacaaat gaaaaccaga aaatggtcta tatatatata tatatatata tatatatata 
001021 tatatatata tatatatata tatatatata tatggtgttg gtttttcttc tcagtattat 
001081 gaaatctaca cacatccaga agagtaattt gtgttggatg atgccaatat ttatttctat 
001141 agtgtatgta acgttgtggc aacatcagca tgtcacaatt tgtgtgtgtc tgtcttaaca 
001201 catgctaatt ttgatgtgtg tgtgtgttgt gcgtgtggag ggcaggggta tcctacccct 
001261 tctgactact atggaaccat cactctgagc tggtaggagc agtaaccatt ttcaccagtt 
001321 aatccatcgc tgctgctaaa tgtatcacta tgtttatttt ttctttaagc caatagcttg 
001381 tctcgacagc atactatgtt caaaatattg tggtgctctc tccaagctgg gttagttatg 
001441 catttataga ttgtcctgct caaatatctt tattgatctt cagtcactgc aagaccattc 
001501 acctccatgc acatgatgca ctctctaaaa aagttacatt ctaccagttc attatctcat 
001561 ttgtcatgtg cagaaaattg tttgattaac tttgttagta ttatgagtca ttcgggatca 
001621 tcaacttgag atgatattaa gtcgtgtcga tatgttggaa ctgggaattt gcacgtgctt 
001681 tcctatctta cacttatgcc actgacagtt gggctctgtt ttaatttaaa acacaggaat 
001741 ttcacagata tcagttcaat tcctacacaa accagaaaaa atctcacatt acatttgggc 
001801 cttaatgttc taatgttttt accgtatttg catatctcca actatatgtt attatttttc 
001861 tttctggcat catgcatcat caattttcct gcatgaaaac atgatgaagc catttaacat 
001921 tatatgactt tggcagcttt cgtgagtgag gatttctcaa acttcattta ttttccatca 
001981 ctgggaggtg ttgaagctta atcatgaggt caattcttgc ttcctacctt tggacatatt 
002041 tctgctggtt tgcatacctt aggcccacgc ccataacacg ttaccaagaa gtatgtttgg 
002101 taaattctga ggattatttg ttattttcca gttgctatga tatgtaaatt aaaaaaacaa 
002161 aactcggccg gcgggggaaa gaccgccccc tcatcttttc aagctaagaa gaaaccacag 
002221 acaaagctag tcaagaaagg ccacgaaccc tgggcccttg acaaagaatc aatttaagca 
002281 gcacctcttt gtttacagtt gtttttcctt tttttttcct ttttacctta caaaagttaa 
002341 ggttccagcc aggcagttat taatatgagg tggtgtaaag attcagcagt ttcaatgatg 
002401 atgaaatcag tggttccatt ccggattact tcagggtcaa atattgttta gatgggactc 
002461 aatgttgaga atttagagct gtatgattgt atgattgttt agtaaaatca aatattacta 
002521 taaatactaa aaagttgaga atttagagct gtatgattgt tgaagtatga tgtctcaatc 
002581 ttttaggccc agaaatagta gtttgttgat ttatgctgct tggatttcag aacctgatac 
002641 gttaaaactg aagggatgaa agggcaaaca gagcttgtca aagttttgtg ttaagaaaaa 
002701 ggtgacacgg ctccttttga tgatggtacc atggtggaat aacttacaat aaggccctaa 
002761 gtgcttagac agatacacca tagctgctga tttgtacatg aattttgttt cgaaaaactg 
002821 tttgattttt agattaaaga actttatgga gttttagatt catacaccat ctttttttct 
002881 tttttggtgt ggaaatgctg gactgttaag agctagttga aaaaaaacta ctgcacaagc 
002941 gtgagtttag agtttactta atttgatttt actgtttttc tttagctctc gtcgtgtgaa 
003001 gtggaatgaa gacaacctgt atgagattga atcaaataaa cctgttaggc agaagataac 
003061 tgagcctaag acaccatatc accctatggt agatgatgat ggtacatgtt ttcctgttct 
003121 gatctcatta tacctttact tgaccatatt agttactgtg tcgttgttga atatgtcttg 
003181 ccattgcttt ctttataggg tcattgtcac caacgcgtcc ttttgacaag tgtctggatg 
003241 agactgttaa tgctgaagct attttaactg ctttaaatgg tgtggcttct tcaagcaaaa 
003301 ctgatccaaa ggatgatggt tgggcatcct cagatgatga tgcagatgcc atggaacaag 
003361 atgatggttg tgcctcttac cctgttccca ttttcatata tctaccctgc atgtagtaat 
003421 ttgctcttat attttccctg tttcagttaa atgcatttga agacatcttg tttttgatgg 
003481 aaaaattaat taattgatta tcaggaaatt acatgaatat gtctgaaaag tcttgtcatt 
003541 ggataagtag cgcaaatctt actggaagtt atagtatgtt aacattttgt aatagtaaag 
003601 cacatacacc gaccaaaccc ttagcattgc tctactaaag caacgtacat atctggagag 
003661 gaggcattta atagagattc tgagaaccag ttcaaaataa atcttgaagg ttatactttg 
003721 taccagctca aaatgatgat gattaaaaca cattttttga gtttgatggt cagaaaagaa 
003781 cagaagtgat tatcaatatt catttatttc cacatgttaa gctagctcca atttatctat 
003841 taacttccaa agcaaattca attttgacct agatgcatct gatgacagat gacacagctc 
003901 ttcttaatat atctgtttta tataattaga caaatgttta gttcttgctt cctcgttggt 
003961 aaatttcgtc aattcatctt aaaatcatgt tgtatacgga gtactttctt ttgacgacat 
004021 aagcaaggga tacataccat cattacgaat tggcaataat ctgttattca ccatagggaa 
004081 cctgaaatct tatggagtat gatagttcct gtgggatgtt tcctggtatc atcggagagt 
004141 tagttatatg ttggtgttca tgtagatcca gaagctgaaa agtcaagact gagtttcaag 
004201 gaacatcgtc gtgctcacta tgatgaattc ctcaaggtga aggagctgat gcgctccgga 
004261 tcgctgattg acgatgaggc tgatgaggat gatagaggtg caaaaggcag ccaagccaaa 
004321 gctgtaggaa agaagccagc aggctgtgac agcacacccc caccgcaaac atgaagcaat 
004381 gaagttaccg ttcctttttc cctgttgttt gctaagctag gaaaagctca acatagcaga 
004441 agcatgtggt ttgtctaaat tgtgtgaagc atgctttgcc tgtgtgttag atccttgtat 
004501 tcaaaatcag atgtgcatcc tgtaaacgac gcatgccatt catcttccct ttgtgtttaa 
004561 gatcttgatg tacctagaat ggctttgatt tagtttgagt tgcctagcta catttacttg 
004621 ctgaacggtg agctcctttg catgttcatt tgagactatt tatcaagagc tgatactcaa 
004681 accacatatt ggataaggcc agatatggca agatatggcc ttgatttgtt tcacgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV937693 bah13g23 618
more... (Total Hit Count: 7 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ677878 whok10h24 805
more... (Total Hit Count: 20 )
/rice/oryzabase