cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK073169     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os05g0110900 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 5
RAP - Location, Length 577,182 -  580,396  ( - );   3,215(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 577,182 -  577,897 ( - );   716 (bp)
Exon 2 Location 578,100 -  578,223 ( - );   124 (bp)
Exon 3 Location 578,305 -  578,447 ( - );   143 (bp)
Exon 4 Location 578,537 -  578,672 ( - );   136 (bp)
Exon 5 Location 578,749 -  579,047 ( - );   299 (bp)
Exon 6 Location 579,779 -  580,396 ( - );   618 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os05g0110900 Os05t0110900-01 209268 J033020B11 11306 LOC_Os05g02020.1 AK073169 26720 AP008211.2 255675924 BAF16358.1 113577995 NC_008398.2 297605017 NM_001060979.1 115461688 NP_001054444.1 115461689
Os05g0110900 Os05t0110900-01 209268 J033020B11 11306 LOC_Os05g02020.2 AK073169 26720 AP008211.2 255675924 BAF16358.1 113577995 NC_008398.2 297605017 NM_001060979.1 115461688 NP_001054444.1 115461689


Chromosome: 5 ,  position: 577,182 - 580,396 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gagtagaatt ctagaagaag gagaaagaaa tcgaaaggca gcagctgatg gttgcatgct 
000061 gtgcgtcgct ctcatgctca aaaggtcaac agagttgagt ccctcagcta aggcaggcaa 
000121 gcacgagagt cacagataca tatccccttt aatctcctct cccaccaatc ctttgatcca 
000181 ttcatcccaa cttcttccat agtacaaatc tcttgctccc ctccctctca tctcctatct 
000241 gtatctattt ctatctctct atctcgtatc tccttgaaga agaacagaga gaggattggg 
000301 aggagtagta ggtagttgat ttagttttga ggagccggag aggagagcag gtgtcctggt 
000361 tcgtgattcg atttcagctg ttctgatcgc ttcttgtggc ttctgtgccg tgctggcctc 
000421 tcgttcttga gcctttgtcg attcgattcc cgcgaaaagg aggcgtcttt ttgtgagtta 
000481 ggtgtggtgc ttcttgggct ctactacctc cgaggtgaag gtgttgttgt tggtggtggt 
000541 ggattttcgc catggggaat tgctggggcg ccaagatcag ctcggagagc ccttgccgca 
000601 gcgcctcctc cccttctggt gcgtctcacc tttctcctct cttcttcctt cctccatata 
000661 gcatttctta ctatggtgat tagaatctag acatgtatgc tatgtttatt cctttttttt 
000721 tcctttagtt ttttttttaa aaaaaatttc tgaagtatcc aatcaatcag tcatatctct 
000781 gtgttgggaa ttttgtgatt tgtgtaattg tgtctgactt gtgtgttact agtataggac 
000841 tataggttat gttaatttaa tccccttttt aatggcttcc tacaggctgt ttagggtcac 
000901 caatcacatg ccttgtctcc tagcactggt agtgcgtgcg tataagttct agtttgagct 
000961 cttcttggat ttgtttcatg cgtaaagctc aattcttctc cttctccaga ctaggagtag 
001021 gaaaggaagc ttccaatgga aacgcacata taactttatc tgacttttcc tttgttgcta 
001081 gtatttgttc gttccaagtg cagaagctca aatcaggcta agtggaaaat tctaattttg 
001141 gtgctacttt ctaccaaaat ctgcgtgctt ttttttcaat gttattgact gtattatgca 
001201 gaaagttcaa tacttttggt gcaacctctt aacttatctg tgaagttttt gccttttaat 
001261 acccaaacca agcaaagaaa caacaacttg atcaggctaa aatctaatgg accacggcct 
001321 gaaaatttgt actgtcttct gttgtttagg ggggacatcc aagtatgcta gcaactccag 
001381 tgtgtctgca gcctcggtgc cgccaacacc acggagcgag gatgagatcc tggaggcagc 
001441 aaatgtcaag gcctttgcct tcaatgagct gaggactgcc accagaaact tccggccaga 
001501 cagtgtgctt ggtgagggag gctttggatc agtcttcaaa gggtggatcg atgagaagac 
001561 gctcgcacca actaagccag gcacagggat ggtcattgct gtaaagaagt tgaatcagga 
001621 aggccaccag ggtcacaggg aatggctggt tagtacccac tggctgattc tttcctgtca 
001681 agtttgcact gtgtatgaca ttatcttcct ttcaatttgt gcaggctgaa gtgaattatc 
001741 ttggacagtt gtcacaccca tatcttgtaa ggctcgttgg gtactgcgtc gaagatgagc 
001801 agcgtcttct tgtttatgag ttcatgccac gtggtagctt ggaaaatcat cttttcagga 
001861 gtaagtagtt tttttttgta ctttcctagt tgctagcttc tgatttacaa tttggaatac 
001921 aacatgctaa aatgtgttgt aaaatgcagg gagtacgcat tttcagccgc tctcctggaa 
001981 ccttcggatg aaaattgccc ttggagcagc aaaagggctc gcatttctcc acagtgacaa 
002041 ggttaaagtc atctaccgtg atttcaagac ctctaatgtc cttttggatg cggtacggag 
002101 tcctcagaac tattatcctt tgtgttcaca agatagctta actggtgatc tgatagacag 
002161 actgtatttt cagaactatg atgcaaagct ctctgatttt gggctggcaa aggatggacc 
002221 gactggtgac aagagccatg tctccacaag ggtgatgggg acttatggat atgctgcacc 
002281 agaatacctt gcaacaggta gcatattact tccatgttct gaatcctaga atgtaatcat 
002341 ttcatcacaa tgaatgaaca tgcacgacaa agatttgagc ttcattacac atcgtgttta 
002401 ctgtcaatct atggttccct tgctggcatc tgggtgccaa acatagagtg atttggctat 
002461 tattgaatta actgacacat ttctctgtat gttgtgaagg ccatctgacc accaagagcg 
002521 acgtctatag ctttggagtt gtgctgctag agatgctatc aggacgacga gcactggaca 
002581 agaaccgccc aaccggggag cacaatctgg tggagtgggc taggccatac ctgatgagca 
002641 agcggcgcat cttccgcatc ctggacgccc ggttgggcgg gcagtactcc cttgccaagg 
002701 cccagaaggc tgcaacactg gcacttcaat gcatctctgt ggaggccaag aacaggccta 
002761 acatggagca ggttgttgct gtattagaac agctccagga ttccaaggag acaggggcaa 
002821 atcctcagct gcagaagaag tccagcagca agaacgcagg cagcaatgga tcgaaaccgt 
002881 catcgaaggg gaagcccgca aatgcgaggc tggtttaagt gaacaatcat atatcatatg 
002941 atcagatata gatctgttga gatgagtagt gtaggctctt agagggacct gtaaagaaga 
003001 ggagagttgt gaatccttgg tgcttgcctg ttttagttgt ttttgcagct tctagtcaga 
003061 gtcttgtctg aagtaaaaag tatgtggtcg cctatatctg catgcattca gttcagtgca 
003121 ttgtggattg tacagtttat atctagttct aatgctgcga aatttttgtt cgaggcaaca 
003181 gatgtgccca gatccagttt ttcctgattt ttaaa

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV928198 rbasd27f16 780
more... (Total Hit Count: 11 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ636024 whdp4g21 623
more... (Total Hit Count: 33 )
/rice/oryzabase