cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK073094     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0440250 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 21,658,384 -  21,661,331  ( - );   2,948(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 21,658,384 -  21,659,576 ( - );   1,193 (bp)
Exon 2 Location 21,660,174 -  21,660,754 ( - );   581 (bp)
Exon 3 Location 21,660,936 -  21,661,331 ( - );   396 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0440250 Os05t0440250-01 J033011G24 209181 J033011G24 3456 LOC_Os05g36920.1 AK073094 AP008211.2 255675924 BAF17581.1 113579218 NC_008398.2 297605017 NM_001062202.2 297604581 NP_001055667.1 115464135


Chromosome: 5 ,  position: 21,658,384 - 21,661,331 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acgtagcccc ggaggaagaa gactctcggt caagagtcaa gacttcgacc aatcgaccaa 
000061 cacgaagcgg caaaggaaac gtcaccgtcg cggcgtcgcc gatggagtcg tccgcctcct 
000121 cctcggccgc ggtggcggcg gagggggcgc cggcgacggg ggagcagctg gcggtgttct 
000181 ggcacgaggg catggtggcc cacgacgccg gccgcggcgt gttcgactcg ggccgcgacc 
000241 cgggcttcct cgacgtgctc gaccagcacc cggagaacgc cgaccgcgtc cgcaacatgg 
000301 tctccatcct ccgccgcggc cccatcgcgc gcttcatctc ctggcactcc ggccgccccg 
000361 cccacgccgc cgagctcctc tccttccact ccgccggtta gccccaaatc tcgctatctc 
000421 aaatcttggg gaaaaaaaac tctaattgac ttggcccata gttagcattc tcgattttta 
000481 ttatctgtta cggcgattgt tacatcctca tttgcatatg gaatcgcaga agattagtgt 
000541 acttaatagt ttgtataaat cttgttatgg ttgacagaat acatagagga gctcgtgcaa 
000601 gcaaatgccg ttggtgccaa gaagctgtgt gaaggcactt tcttgaaccc tggatcctgg 
000661 ggtgctgcgc ttctggcggc tggaacaact ttatcagcga tgaagcacat actagatgga 
000721 catgccaaga ttgcctatgc gttggtccgc ccccctggcc atcatgcgca accggaccgt 
000781 gctgatggtt actgcttcct gaacaatgct gggcttgcag tgaagctggc tctggattca 
000841 ggacgcagaa aggttgctgt tgttgatatt gacgtgcact atggaaatgg cactgcggag 
000901 ggcttctacc acacagacag cgtgctgacg atctctcttc acatgaagca tggttcatgg 
000961 ggtccatcac atccccagag tggctcggtg gatgagattg gtgaaggcag gggtcttggg 
001021 tacaatctca atattccttt gcctaatggc agtggggatg cagggtatga gtatgcgatg 
001081 aatgaattag ttgttccagc catagagaag tttcgtcctg agcttttggt ttttgttgtt 
001141 ggccaagatt ctagtacggt gagtcgaact ggcatctatc ttagttcatt gcattttgca 
001201 tttgctaaga gtctaagatt ccacactatc gtaatataat ttttctttta tgcaattata 
001261 gctgctgttt catttgacaa gcaaggttta atgtacttat ataataattt tcttgcgtgt 
001321 tcaagaaaaa aaagtgtact tatataaaca atcctaataa attcggataa tcttttgcca 
001381 tcacctaaga aaacaacaac attttgatta caatattagc actagtcaat ggtgtaaaga 
001441 tttaattctt gtgtttatag ctttatatat ctaaaccaag acaatactat caaaagagtt 
001501 caaaataatc tgtctctagg atattctgaa atcattacta tgttggaata ataattttgg 
001561 atctttgcaa agtcgcatct taccaaaacc taatttcacc ttttccttgc ctccctgaat 
001621 aatgcaccac tcatatgcag tgatacttaa tacattgttt tacaatacga aactatctat 
001681 catagtgatg gtttaactgc atatttcaaa attatatctg aaacaaactt attaatggtt 
001741 gttattccct tgcagtttga tcccaatgga agacagtgct taaccatgga tggttatcgg 
001801 aaaattgggc aaataatgag aggcatggct gatcaacaca gcaatggtca aatattgatc 
001861 gtgcaggaag ggggttatca catcagctat tcggcatatt gtctgcatgc aacactagaa 
001921 ggtgttctga atctacaagc cccgttgctt gatgatccaa tcgcctatta tccagaggat 
001981 gagaaataca ccatgaaagt tgtggacatc atgaagaaat gctggaaaga atctattcca 
002041 ttcttgaagg acatatagaa atccatttct tttagatgcg agtgcccttg aacctcaatt 
002101 tcatatcagt gcaccgtcta ttcttatggc cttttgactg aaagtacatg cattcattgg 
002161 agcaacattc gagtgcttgt tcctttcata aacccctgat tcacaagttc tcaattcaca 
002221 ttggtattgt acatacatca tgtcaaactc taccatctta tatttgtgga cctcaattgc 
002281 tgcgcctaat aagtaacgct gactaacaga tgggctgttt gattatgcaa tggggcattg 
002341 gggctacagc cacctgtatt atataagcgc accagttcca agtctgaaac caagtgccaa 
002401 gtctgaatta ttgtctagca aggaatgcta cctgctgcca catcactcgt caacttactg 
002461 cctacagcaa tactggaagg taatttttca atatgactac tgctagtgct aggtgatcca 
002521 attgcttgcc acccagtgaa tgaatcgtcc atctgttgca aaagctggtc acactgccaa 
002581 gaaatgccag aaagaatcaa attcctttgg aagtggctct ttggaaggaa tacatccatc 
002641 ttcttgtgat ttgcgggtgt catctcgctc catggaacca tattctacct gcgtcagcga 
002701 cttatctccg atgatttttt gcagcaaatc atacgcgccg caaatgcttt ttcaggcggt 
002761 gcgatgcgtc gatctctatc gaggcggttt cttttccgag tccgtgtgtt tgtggtgaac 
002821 tgctccgtcg tatggctgca atgctatgca aaaattttgc tcggttgctt gctttcgcac 
002881 ctggagttct tgaagaattc tgtacaggtg gacttttatc tgaaattctc tggtcaactt 
002941 catctccc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK252219 FLbaf149n22 1605
more... (Total Hit Count: 3 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ706021 whv16n4g11 758
more... (Total Hit Count: 7 )
/rice/oryzabase