cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK071687     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0169300 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 4,152,910 -  4,155,863  ( + ) ;   2,954(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,152,910 -  4,153,207 ( + ) ;   298 (bp)
Exon 2 Location 4,153,398 -  4,153,704 ( + ) ;   307 (bp)
Exon 3 Location 4,154,608 -  4,154,885 ( + ) ;   278 (bp)
Exon 4 Location 4,154,971 -  4,155,287 ( + ) ;   317 (bp)
Exon 5 Location 4,155,384 -  4,155,863 ( + ) ;   480 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0169300 Os05t0169300-01 J023113A03 207582 J023113A03 6551 LOC_Os05g07720.1 AK071687 29421 AP008211.2 255675924 BAF16675.1 113578312 NC_008398.2 297605017 NM_001061296.1 115462322 NP_001054761.1 115462323


Chromosome: 5 ,  position: 4,152,910 - 4,155,863 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ccaaccactt cccctatcta taaatagaga ggagaaggga gagtgagtgt gagttggtca 
000061 tggcggcgat gggcagcaag gatggcggcg gcggcggtgg cgggatggcg gcgcaggctg 
000121 ggaggctcgg ggtggtcgcc tccgtggcgt tcaacctcgc cgcgctcgcg ttctacctcc 
000181 gccggagata cttcggcggt gacgacgccg ccgcggtgag gaagaaggcg gaggcggagg 
000241 tcgcgccgtc ctccgggaag ccgccggtga ccaaggactc aatcatcaac ctcgaccagt 
000301 aagtgttctc gtctgatccg ccgccggtgg atcgatggat cgatcgatcg atctcgacca 
000361 cctgttcgtc catgcatggc actgtacacg tgacgcctcg cgtcgcgacg cggcgcggcg 
000421 tggcgcggcg tggcgtggcg agtgagtttt gttccgatct tgatctcttt gtggtgatgg 
000481 cggcgcagcg gcgacccgac gatgtacgag gcgttctggc gcggcggcgc cggggagagg 
000541 gcgacgatcg tgatcccggg gtggcagacg atgagctact tctccgacgt gggcagcctg 
000601 tgctggttcc tggagcccgg gttggagcgg gaggtgcgcc gcctccaccg cctcgtcggc 
000661 aacgccgtcg ccgacggcta ccacgtgctc gtcggcaccg gatccaccca gctcttccag 
000721 gccgcgctct acgccctctc gccgccgggc ccctccgccc ccatgaacgt cgtctccccc 
000781 gcaccatact actccgtaat ttatcaatcc gatttcatca cttgcaatca aatttgtttt 
000841 ttccttttcc agatgagaaa ttttacagtt cttgaaaaat gtagttttat catttttgga 
000901 aaagtacttg gagatgccat gttttctagt ggtatcttca tccttgaaaa aggtagtttt 
000961 tcgttttctc attagaaatt ttagtgtcct tgagaaaggt agatttattt aatatcttta 
001021 agaaagtaca tggaggtgcc aagttttatt ttataaaact tggtaccaaa attcttattt 
001081 ctagtgtaaa acttaggtac tacgaggtat tttctcagta tccgtaaaat ttcttcctcg 
001141 agaaagtgtc ttgagatacc taaatttcac attaaaagtt ttgagaagta cctaattaaa 
001201 tttcacatta aaaattgata agtacaaata taagttttat gctagtaaat gtgatacctc 
001261 taactacatt ctcaaatata gtaaaattac tcttttctga ttgatcttga tagggaaact 
001321 attctaaact ctcgagaggt gacattctct catagttcgc atatcatcta agttgttgcg 
001381 atttttttta aaagaaatac atcaacaaga tagactgata ttaccaactc gaaatgatag 
001441 aaatggtaaa gttaaatact ccctccgttt cacaatgtaa gtcattctaa catttcctac 
001501 attcatattg atgttaatga atctagacat atatctatct agaaggaagt atgaatgtta 
001561 atgaactgtg ggaaatatta gaatgactta cattgtaaaa cggaggaagt acgattgatc 
001621 ttgacatgat ttaatcttta tttttgtttg acacaatata tcttttgtgt tgtgtggatg 
001681 cggcgtggcg gggcgcagtc gtacccggcg gtgacggatt tcctcaagtc ggggctgtac 
001741 aggtgggccg gcgacgccaa gatgttcgac ggcgacacct acgtcgagct cgtctgctcg 
001801 ccgagcaacc cggacggcgg catccgcgag gccgtgctca agtccggcga cggcgtcgcc 
001861 gtccacgacc tcgcctacta ctggccgcag tacaccccca tcaccagcgc cgccgcccat 
001921 gacatcatgc tcttcaccgt ctccaagtgc accggccacg ccggcacccg cctcgggtac 
001981 gtacacacaa atttcatcgt acgaatactt ttgaaattcg aacaaatttt ggctcaatgt 
002041 gattggcttt ttttggcaca ggtgggcgct ggtgaaggac agggcggtgg cgcagaagat 
002101 gagcaagttc atcgagctca acaccatcgg cgtctccaag gactcgcagc tccgcgccgc 
002161 caagatcctc aaggccatca ccgacggcta cgaccgcgcg cccgccgccg gcgacgacga 
002221 cgacgactcg agccgactgt tccacttcgc ccgccgcaag atggtctctc gctgggccaa 
002281 gctccgcgcc gccgtcgccg cctccggcat cttcaccctc cccgacgagc tccccggcca 
002341 ctgcaccttc gccaacgaga ccgtctccgc ctacccccgt acggacacac acacgaagct 
002401 cgatcgcatc gccattgctg acatgtttgt gttcgatcga tcgccattga tgatgtgatt 
002461 tgatttgggt gcagcgttcg cgtggctgcg ctgcgggaag gaaggggtgg acgacctgga 
002521 ggggtacctg cgcgagcgca agatcatcag ccgcggcggc ggcaagttcg gcgccgacgg 
002581 gagggtggtc aggatcagca tgctcgacac cgacgaggcg ttcgccatct tcgtcgaccg 
002641 cctcgccgcc atgaactgat cggtcgatcg agcgagcgag ctcgccccag ctagggcttg 
002701 atcttgaatc ttgatcgatg tcgacgatga gatggtcagt taagttgcga ggattaagat 
002761 caagcttaat tagttatcgt cgtcgtcttt ggttgcttca tcaagttcgg ttctagatat 
002821 cgatctgggg tgcatgcatg gtaatgtgct ttggttaata ttagtccaaa actctatata 
002881 attttggatc gactcttaaa atttcgatgt tgtgttgtga gactttaatt tgtgagtttg 
002941 tggctggttg gata

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
BJ248655 whf7g03 429
more... (Total Hit Count: 3 )
/rice/oryzabase