cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK071143     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0553000 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 27,627,278 -  27,629,340  ( - );   2,063(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 27,627,278 -  27,627,390 ( - );   113 (bp)
Exon 2 Location 27,627,467 -  27,627,570 ( - );   104 (bp)
Exon 3 Location 27,627,657 -  27,627,774 ( - );   118 (bp)
Exon 4 Location 27,627,888 -  27,627,976 ( - );   89 (bp)
Exon 5 Location 27,628,081 -  27,628,156 ( - );   76 (bp)
Exon 6 Location 27,628,771 -  27,629,340 ( - );   570 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 UniProt
Accession No		 UniProt Entry
Name
Os05g0553000 Os05t0553000-01 J023081F24 206996 J023081F24 222 LOC_Os05g47980.1 AK071143 33778 Q01859 ATPBM_ORYSJ


Chromosome: 5 ,  position: 27,627,278 - 27,629,340 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 actccgctcc cctcctctcc tcctcccttc tcgcggaggc cgccgcaacc aaaaaaaaaa 
000061 aagtctaacc ctagatccag gccccgcgtc tccggcgatc tcccggccat ggcgactcgc 
000121 cgggccctct cctccctcgt ccgcgccgcc tccaggctcc gcggggcctc gcccgccccg 
000181 cgcccgcgcg ggccgctcca ccgaccgtcg ccatcggggt acctcttcaa ccgcgccgcc 
000241 gcgtacgcca cggccgccgc ggcgaaggag gcggcgcctc ccgcgcccgc gacggggaag 
000301 gccacgggtg gaggtaagat caccgacgag ttcaccggcg ccggcgccgt cgggcaggtg 
000361 tgccaggtca tcggcgccgt cgtcgacgtg cggtttgacg aggggctgcc tcccatcctc 
000421 acggcgctcg aggtgctcga ccacaacatc cgcctcgtgc tcgaggtggc gcagcacctt 
000481 ggcgagaaca tggtgcgcac catcgctatg gacgggactg aggggcttgt ccgcggtcag 
000541 cgcgtcctca acaccggctc cccaatcact gtaatgcccc cccgcccgtc ttctcatcct 
000601 tgtttgcgat cgtacatttc atttcgtgtt gtctccgacc agatctgacg aaatgtggat 
000661 ctactgctgt cagatttgat ctaggtgtac agttctgagt ggcgagcgat cgcccttcca 
000721 tttcgttcat tttatcggta gactgttggc tgctttgtgg tggtctgttc gtgctagtga 
000781 agaaattgac tttttttccc ctataaagtg ctgccttttg gtttgtggtg gtcatctaga 
000841 gtctattaga attcattatg ttcaccagtg ttgcatttcc gtattggcgt attgtgaggt 
000901 taacatgcat tggttggtat aacttttcca ctgtttgctt gaatgaaaat tgtcgtcata 
000961 gtctaggaat ccattccagt ttttgtttat ttaataccct tgccaattgt ttagcataaa 
001021 atgggcatta ctgaattcag agaactgctg atgcattcgt gtaaattctg attataatta 
001081 gagttgctga accttgtatc tgtagcattg tcttggaagt tgaaactaat catatataat 
001141 gtgttctact atgtttttga cttggaagtt attcttcttt gtaggttcct gttggcaggg 
001201 ccacgcttgg acgtatcatg aatgttattg gtgagccaat tgatgagaag ggtgacataa 
001261 gtaagttact atatgttcca tgtcttcatt attcatagtt atttaagaat ttgtgtgtcc 
001321 agttcttatt tatgttttgt tattgatgct gacttctatt gtagcaacga accacttcct 
001381 tcccatccat cgtgaggcgc ctgcttttgt tgagcaagcc acagaacagc aaattcttgt 
001441 tactggaatt aaggtataat tgtcccaccc ttctctgatc ctgtggttat ctgaagtatt 
001501 tgaatggtaa atagttgcaa ccatgattta gagtcctaat tgctgtacat tggtttaatt 
001561 ttataggttg tggatctgct tgcgccctac caaagaggtg gaaagatcgg tctttttggt 
001621 ggtgcaggag tcggcaaaac tgtccttatt atggagttga tcaacaatgt tgctaaggcc 
001681 catggtatgc atctatacat agtctcatgt gtgatattgt tcaaatttca gtcacttgtt 
001741 ctatttgact gatgatgatt tgtttgccag gtggtttctc tgtgtttgct ggtgttggtg 
001801 aacgtacccg tgaaggtaat gatctttaca gggaaatgat tgaaagtggt gtcatcaagc 
001861 taggtgacaa acaggtaatt ttagttgata tcttattttc tgtgggacgc acacatgtgc 
001921 aagctactta tatatcaatt ttggttgcag agtgaaagca agtgtgctct tgtctacggg 
001981 caaatgaatg agcccccggg tgctcgtgct cgtgttgggt tgaccggttt gactgttgcg 
002041 gaacatttcc gtgatgccga agg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ465198 bags38k06 661
more... (Total Hit Count: 33 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ874255 whthls15e15 732
more... (Total Hit Count: 94 )
/rice/oryzabase