cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK070578     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0301700 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 13,572,067 -  13,576,512  ( - );   4,446(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 13,572,067 -  13,572,431 ( - );   365 (bp)
Exon 2 Location 13,572,516 -  13,572,581 ( - );   66 (bp)
Exon 3 Location 13,572,676 -  13,572,792 ( - );   117 (bp)
Exon 4 Location 13,573,289 -  13,573,360 ( - );   72 (bp)
Exon 5 Location 13,573,446 -  13,573,725 ( - );   280 (bp)
Exon 6 Location 13,573,995 -  13,574,197 ( - );   203 (bp)
Exon 7 Location 13,574,697 -  13,574,764 ( - );   68 (bp)
Exon 8 Location 13,575,162 -  13,575,225 ( - );   64 (bp)
Exon 9 Location 13,576,382 -  13,576,512 ( - );   131 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0301700 Os05t0301700-01 206391 J023061F14 4607 LOC_Os05g23620.1 AK070578 36852 AP008211.2 255675924 BAF17050.1 113578687 NC_008398.2 297605017 NM_001061671.1 115463072 NP_001055136.1 115463073
Os05g0301700 Os05t0301700-01 206391 J023061F14 4607 LOC_Os05g23620.2 AK070578 36852 AP008211.2 255675924 BAF17050.1 113578687 NC_008398.2 297605017 NM_001061671.1 115463072 NP_001055136.1 115463073
Os05g0301700 Os05t0301700-01 206391 J023061F14 4607 LOC_Os05g23620.3 AK070578 36852 AP008211.2 255675924 BAF17050.1 113578687 NC_008398.2 297605017 NM_001061671.1 115463072 NP_001055136.1 115463073
Os05g0301700 Os05t0301700-01 206391 J023061F14 4607 LOC_Os05g23620.4 AK070578 36852 AP008211.2 255675924 BAF17050.1 113578687 NC_008398.2 297605017 NM_001061671.1 115463072 NP_001055136.1 115463073


Chromosome: 5 ,  position: 13,572,067 - 13,576,512 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tcttctcttc tcttgggaac ctccacttgt gctcgcctcc tcgtcctcct cctcctcctc 
000061 cccctcccgg taaggcggac gaccgagctg aggctgagct agggctaggg cacccacctc 
000121 ctccccttcc ggtatggcct ctcccctctc ctcatgattt cttttgcgag ttcgtccctg 
000181 cgatcgattt gttaggcgag cgctagggat gcgcagatct gttacctggg tgggttggat 
000241 ggatggatgg aacctgtcga ttcgattctt ctgtttgttt gtttggaacg tgtagatctg 
000301 cccccaaatg ggtgctttgg agaatcacgc ggatctacca tccgccatgg gatgggatgg 
000361 gatgggatgc cattttgact agtttgtttg atgcctgtga accgcctaga tctgcccgct 
000421 ctgtttggtt tccttggtac ttgttgttag aacaatggaa cccctagtgg atgagggacg 
000481 gactagtgct gtggatttgg gcatatggtc cagtacgtga acacgcatcg tgtaccacat 
000541 ggatcatacc catttttttc cctttttctt gtcacgtacc aagtaatctt tttcgctaga 
000601 tagattaggc acggctgaga tatcactaca tcatcatgaa aaattgagat gatttattcc 
000661 tgtggctact tatgttcaat gtgccttaca gttggcacct aacaattgag atgatttcgc 
000721 atggtatgtg cttatttatc gacaatagtg caatgctcca tttatactaa tctaaacttt 
000781 ttgcgatgca agtttcatct tgtttctttg atatcatgtt ttaggtcact ggcgtatctg 
000841 gtacacttct ttttgtatat tttcttgtaa acacactgat tagaatactg caatttgtga 
000901 gttatggcct agatgaggtg ttagataaaa gttttgcacc atatgtcttt cactatcttc 
000961 atcctacttt tagcaaatta gtttacatga tatcgatatg tcaggtatgt cactataggc 
001021 acatcaatat aggatgttgc cgtcatggtt tacgtgcatg cattaggtct tctgcaaatg 
001081 cagtaacagc actatcctct aattaggtta ttgatataat ggtcttgtgt taaccacata 
001141 gatggataaa ttggcctagt tgctattacg cggtcttcca cggtttgcat ataagaaggg 
001201 ggctaggggt tgtagctaga caatcaaatc tatgctttgt ctatgcaata acaaggttcc 
001261 ctttttcgac ctgtgtaact tgtttaggta gagcattgtg gtgagatagc atacatactt 
001321 ctttcaagga gcaagtatgt agtaagttaa ggtctgcagt aaggtcaatt taaacagttt 
001381 ttttcagaga ttgtaatgca tggcaccaaa tgtatgctta tttcttttca tgagttaata 
001441 aaaaaatacc attcagttgt tttaattttg acattggggg ttgattttct gacatatact 
001501 ccctccgttc cagaaaaaac caacttctgg ggacaaatct agacaaatgc atgtccagat 
001561 ttatctccat aagttgattc tttttgggac ggagggtgta aatttgcggt gaatcctcct 
001621 ggttattact caaattcact ccacttggat ggttagatac tgtaaatgaa atatgcacag 
001681 ttgcttctac taattatgat gccataacct cttttattgt acatctcagt tttcaatatt 
001741 tgatgcagta tcctggatgg ctgctggtcg gggcattaac cagctcctac ggagaacact 
001801 ccataatcag tcctcagtaa gaattttaat gaactattta ttttgtatta cttctgtcaa 
001861 aaaccgatcg cttaccaatc tttttaatat ttattttctg tctgatgcct gtatgaaatg 
001921 ttatggtata ccaatcttga attgattatt gaaatggcat gtagaaaggt attaccggac 
001981 atcactataa cgtgaaatgt atcagatggg gttttggaaa gaaatcacag ttcacattct 
002041 tactagttac tactgcacag tttttagggg tttctgtttg gcaggattga tctttattct 
002101 actttttaca gttaaacctg cattatgcat acaatgctta tttttgctgt tctggttgag 
002161 taattagacc atgatatcaa ctacttatcc taattttgac aaagtttata atctgacagt 
002221 aaccatttgt tcaccataag tttcagtacc catgatcatc tcctttttag tgtggtgacc 
002281 tgcttttttt taaaacatta taatcatgtt ttcagggctc atctctgcta tcctcgttcc 
002341 ggataaagca tgaagaatcc tccgctggac tgagagcatt ggctcttctt ggagttggtg 
002401 cttctggtct tttaagcttt gctacaatag cttctgcaga tgaagctgag catggtttgg 
002461 cagcagctga atatccctgg ccacatgctg gcattcttag ctcttatgac catgcatcgt 
002521 gagtcatcct ttttcaactt ccttacaaaa tagagtttag ctcattgcaa tatttcagag 
002581 tctttgcata cggtatttgg ttattattaa ttgatccatg ctcttggtta ccccaatcct 
002641 tcaaacctac ttcaccaatt tagtttccca gtaggatagc gaaaagaatc acaatattct 
002701 tttgctccca agaaaatcct tttaaccact actaccctat tcttgctgtt tactcattgt 
002761 cttatatttg aacacttcta tgatcagtat tcggcgtgga catcaagttt atacacaagt 
002821 gtgtgcctct tgccattcca tgtcattaat ttcgtaccga gatttggttg gtgtggccta 
002881 cactgaagaa gaaacaaagg ctatggctgc tgagattgag gtggttgatg gtcctaatga 
002941 tgagggtgaa atgttcacac gtcctggtaa gttaagtgac cggttcccac aaccatatcc 
003001 aaatgagcaa gcagcccgtt ttgcaaatgg tggggcatac ccaccagatc tcagtcttat 
003061 cacgaaggta atgatatttt atgccattgg cgttgcattg tttaatcttc caccttcaag 
003121 ttgtaattta ctgtttgact ccgtatgttc aggcaaggca caatggccag aactatgtgt 
003181 ttgctcttct tactggttac cgtgatccac ctgccggtgt tcaggtaaat ctcattctct 
003241 gtcagttata ccttaggcat ttgcagttgc tacttgctat gtgtatcgcc cttaattcct 
003301 ttacaaacaa taaagatgct cttgcatgtg gattgaatca cttgtgtcac agggatacat 
003361 attttacaga cacatgatat tgacatcaaa tttgacactg ttgtaactct gtaattgcaa 
003421 tactggttga acttggaggt gctcagcttc aagttgtgtt gtcccattgt tgtttgagtg 
003481 ttttctctgt taatttacaa ttattcagcc tctcatttgt tgtcagttat tgtttggaat 
003541 tcactacata atcactattt ttgttcataa ttatgatgtt gaactctatt ttgaaaaaaa 
003601 cctaacctgt cccacgaagt gttatttttc tagctgtaat ttttcaagct ggttgtgttc 
003661 tgttatttgc tttctgcagt gtgcaacatt agtaaactct ctggttgatt tgtattctag 
003721 atccgtgagg gtttgcatta caatccctac ttccctggtg gtgccatagc tatgcccaag 
003781 atgcttatag atggagctgt tgaatatgaa gatggtactc ctgccactga agcccaggta 
003841 agtttctaat gcgttgttgg gctcttacag ttgtgacatg ttgggttagc attaagggcc 
003901 taagcatgat tgttgtcatc ctctaccaca gatgggcaag gatgtcgttt cgttcttgtc 
003961 atgggcagct gaacctgaga tggaagagag gaaactggta atcagctcaa cttttgtcca 
004021 tttatatatt actttcaatt cgcaatattt cctaatacca acctactcta atttgatgta 
004081 gatgggagtg aaatggatct tcctactgtc acttgcactt ctccaagccg catactaccg 
004141 tcgcatgagg tggtccgtcc tgaagtcacg caagctggtc cttgatgttg tcaactgagg 
004201 gaccactgtt tcttactttc attaaaatgt tttgagcatt taagcggaag catttcaaat 
004261 aatgagtatg atgtacattc tgccactggg gtttcccatg cctagaattt tctgttttct 
004321 tcctctgctg caaaagcatt ttcttcatgg gagcacttgc aatttttgtc aatgttacct 
004381 gaatggtacc agcaagcttc taacagaact gctaaagttc ataaatcttt atgttttgaa 
004441 ctgtgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK251430 FLbaf116p23 1279
more... (Total Hit Count: 32 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ818710 whsct35d01 957
more... (Total Hit Count: 131 )
/rice/oryzabase