cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK070528     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os05g0323900 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 5
RAP - Location, Length 15,075,763 -  15,080,411  ( + ) ;   4,649(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 15,075,763 -  15,076,118 ( + ) ;   356 (bp)
Exon 2 Location 15,078,220 -  15,078,266 ( + ) ;   47 (bp)
Exon 3 Location 15,078,375 -  15,078,500 ( + ) ;   126 (bp)
Exon 4 Location 15,078,597 -  15,078,653 ( + ) ;   57 (bp)
Exon 5 Location 15,079,418 -  15,079,495 ( + ) ;   78 (bp)
Exon 6 Location 15,080,149 -  15,080,411 ( + ) ;   263 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os05g0323900 Os05t0323900-01 206333 J023060D13 5679 LOC_Os05g25850.1 AK070528 30547 AP008211.2 255675924 BAF17109.1 113578746 NC_008398.2 297605017 NM_001061730.1 115463190 NP_001055195.1 115463191 Q43008 SODM_ORYSJ
Os05g0323900 Os05t0323900-01 206333 J023060D13 5679 LOC_Os05g25850.2 AK070528 30547 AP008211.2 255675924 BAF17109.1 113578746 NC_008398.2 297605017 NM_001061730.1 115463190 NP_001055195.1 115463191 Q43008 SODM_ORYSJ


Chromosome: 5 ,  position: 15,075,763 - 15,080,411 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 acctgccact cgcccactcc tcctcctccc ccatcctcca gtgctacggt gtcacgcagc 
000061 catggcgctc cgcacgctgg cctcgaggaa aaccctagcc gccgcggcgc tgccgctggc 
000121 tgcggcggcg gcggcgaggg gtgtgacgac cgtcgcgctc ccggacctcc cctacgacta 
000181 cggcgcgctg gagccggcca tctccgggga gatcatgcgc ctgcaccacc agaagcacca 
000241 cgccacctac gtcgccaact acaacaaggc cctcgagcag ctcgacgccg ccgtcgccaa 
000301 gggcgacgcc cccgccatcg tgcacctcca gagcgccatc aagttcaacg gcggaggtga 
000361 ggccaagtcc cgcccccctt accccttcct cgcatacggc tttctttctt tctttttctt 
000421 cgtcctgttc atcgcgggcg atgcgggcgg cgggggatct gaggaattgg gtggggtatt 
000481 tgtgtgctat tgtggctgat ctggattggt ctggacggga gaggcagtgt gctcccccaa 
000541 atggagaatc ggattgggtt gggggtttta ggatcctccc atttctaggg gtttaggtgg 
000601 ttctggtttt attatcggcc gcgaatttag gtttaatact gtgttgtagt ggtctggtac 
000661 atacactatt ttttaaaaca gttgagacat gtgttaactg cgtgggtgtt ttgagtataa 
000721 aatttgaaca attttggtgc ttgttatcca cagttaggcg ttagctgtct tgattgtcat 
000781 ttggttcagg tagtgattag ttggtgtgcc tttgattcct gcaaaatttg agctgtttta 
000841 tattaatttc ctgtgtttga gaggggctca gtctaactgg tcaggtagcg atccattgtt 
000901 gtaattttgc tatccagtgc ttctctaatt tgatcaggca gttggatgaa tgggtgatct 
000961 gttaagcttc atttctaggt gaaagttctg tatgcggtaa tgtactttgg gctcgaattt 
001021 gaacaatttt gatgcatgtt ctctgcactt agctatcctg attgtcagtt ggttgtgctt 
001081 ttaaggattt gttcgcctaa gataggattt gagtagattc agcattgggt tcttgggctt 
001141 gtgccatagt ttattttaat ctagctttca acttttgaag gccctctttg ttttatgttc 
001201 tagacatatc tagtgtttga tggggtgtat tgtcatcgca gaagttcgaa ctgcattgaa 
001261 ttttgtgctt gtacaccctt taatttaaag ggtatgttat gttatctccc atctcaatgc 
001321 cagaaatttt cctgtctcct gtaaaaattt gagttgtttt atgttaattt cctgtctttg 
001381 agatgaactc agtctgattg gtcagttagt gatccattat tgtaattttg agatccatcg 
001441 cttctttaat ttgatcatgc acttggagaa tggttgatgt attaagcttc atttctatat 
001501 gaccagatgc gtttctacta aattagacag caccatgatg catccatgag ctgctgattt 
001561 attgagctca ggttgagctg cctttgagtt ggttccacag ttgccaattt ctctaataaa 
001621 aatatataga gacaaattag tggtcccctt ttactatctc ttcagaaaat tttatttaac 
001681 tttgaagaaa tagtttggta gtttcactta tattcatatg ttggatgata atatacatga 
001741 taaattggcg taaggttcac aatttcacat tacaccaaac tatcagggtg tgtttggata 
001801 atgggaaatg gggagtggga ttaggattgg gaaatcaatg aagggttagg attaaatgga 
001861 actggaagaa tgaatggtta ggatttaaag atgcattttt gtgggtggga aatcatttcc 
001921 ctatcccatt agccaaacac tccgtcaaag ggaacagcag gtggtatggt agtaaagagg 
001981 tatcctcagg acagggctac gttgttccag ctgggaccca agctgccgcc cactcccaac 
002041 gctcctgtag gatggagctg ctgtgtttgt gttattgtgt gagcgcggaa ttgaagagac 
002101 tagtgttcct ttcttctaga gcctccaaaa aatcaggatg ggtgtgactt ttgccagctc 
002161 ttagctaaat tcttgcactt ggatagacac cactgcaaga ggaaccaaag ccaaatcttc 
002221 cgagcataga cacaagaaat aagcaaatgg tcggcacacc cctcctgacc atgaagcaga 
002281 aggcttagtg ggtgtccatt cactgccgga gcatctcatc tgttgtctag attcattgat 
002341 ttgcaataaa aaaaattcta gagttaattt attgcgattt cgttgctctc agatatctac 
002401 tctattcgtt acaacaaaga tattttcagt aatgcctttg tattaactgt gctgcaggcc 
002461 atgtcaatca ttcgatcttc tggaataacc tcaagcctat cagcgtaatt atccagtcca 
002521 tacaacttgc tccatttctt tcttcctcca cttacttttt ttctactgga tctccaatca 
002581 ccgaattaat gaaaatattg ggtgttttac aggagggtgg tggtgatcca ccacatgcaa 
002641 aacttggctg ggccattgat gaggattttg gttcatttga ggcacttgta aagaagatga 
002701 gtgcagaagg tgctgcttta caaggatctg gatgggtggt atgtacacca tgcattgctt 
002761 tatccattga tgtgtcatcc tgttcagtct gaagaaatgt attgttcatt tattatattt 
002821 attttctcgt acagtggcta gctttggata aagaggcaaa gaagctttca gtggaaacaa 
002881 ctgctaacca ggtgaaagtt cttaactctt tgtagattat attatttgcg cataataaca 
002941 ggatgtccta taccatgcag tctactcttg aacaacaaca gttcaattca gtagattctt 
003001 atcatttttg tcatgttttc aatgtctgtt gagatagtga taaaaaacac ttctgtaaga 
003061 tcaagggatg gggattagca atatggtaca tcaatggtta ctgcagaaac acatcgttag 
003121 aaacatatgc aataattttg gtacattggg caaggaaact gttattggat gcatgttcat 
003181 tgttctgata aaaaatggta ccgatcaata tgctagtggc ttgctaaaat atgttactgc 
003241 agtttagtta acatgtactg ttgaaacaat accttgttca gcagtcctgc aattggattt 
003301 caagagttaa gagcaaggac actatatttt gtttaataag ttgttatgac atggtactta 
003361 aaattaatgt gttttaccag tataagatgt attgtcttct gaacatacta ttttctaaca 
003421 tcctgtaaac ttttatgaag tatctatgaa ttttcattgt ttaatgaatt ctgaatatga 
003481 ctgttctaag tacatggcaa gagtttgctg ttctcatagt tcagtttttg ctttggctaa 
003541 tgtgttgagc aatatgaaat tgtagcccta ctttctaaag gaaagaatac atttttttta 
003601 gcatcctaca tggtgatttg ataatagggc acagctgact tcttgcaatt tgcaggaccc 
003661 tctggtaacg aagggggcca acttggttcc tttgttggga attgatgtct gggagcatgc 
003721 gtactacctg caggtaatct catgctgttg tgggggtcag aggcacactc attgtttagt 
003781 tgctcttatt ctgctgttgg ttattattcc taatggcatg ttgtaatttg cttatgttgt 
003841 tagtgttgct agcgccacat atgatgtgtt cattgatcac aaattcacac ttgaatgagt 
003901 tggacaactt attccccttg tagcatttgc actacgaagc tattgccttt ttttttaaga 
003961 taatggaaag aatcctgggc tttacttcaa agaagctaca accacttatt acataattca 
004021 ctgaatgaag ctactgcttg aaaatacggt tcccattgtt ttccacaaga cctaacagga 
004081 gcagagtaga atgatatcac attgtttcat gggttatgtc tcaaaagatc agagaaaatt 
004141 taggagtagt aggatgtgac taggcatcga atacgcatgt gcatgaatac aaaatgtgag 
004201 taccattgaa gattactagt attgtacgtt ctgaacttct gatgtagtac atagtctgac 
004261 tatagaagga atagttacct ctggctgttt aacaacttac aacatcgtgc acacccaact 
004321 tatttgtgct tcgaatttca acctttgcta ttgctaaaca gtcttcattg atttccgtgg 
004381 ttgcagtaca agaatgtcag gccagactac ctgagcaaca tctggaaggt gatgaactgg 
004441 aaatacgcag gggaggtgta cgaaaatgcg actgcttgat gttgtctgaa ggcaacgctc 
004501 atggtttttt ttcacctagt actgccatgg atctttgtat gcaataaaaa tgggcctatt 
004561 gcacttctgg accttgtgta cattgcgtag aggtggacta atgcataaca taatatgcct 
004621 gagattttct tcttgtgctg ctttcctgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK250143 FLbaf66o21 896
more... (Total Hit Count: 31 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ663013 whkp14o21 761
more... (Total Hit Count: 110 )
/rice/oryzabase