cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK066252     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0183100 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 4,998,315 -  4,999,632  ( - );   1,318(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,998,315 -  4,998,704 ( - );   390 (bp)
Exon 2 Location 4,999,142 -  4,999,288 ( - );   147 (bp)
Exon 3 Location 4,999,379 -  4,999,632 ( - );   254 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0183100 Os05t0183100-01 201670 J013052M10 1579 LOC_Os05g09020.1 AK066252 13010 AP008211.2 255675924 BAF16738.1 113578375 NC_008398.2 297605017 NM_001061359.1 115462448 NP_001054824.1 115462449
Os05g0183100 Os05t0183100-01 201670 J013052M10 1579 LOC_Os05g09020.2 AK066252 13010 AP008211.2 255675924 BAF16738.1 113578375 NC_008398.2 297605017 NM_001061359.1 115462448 NP_001054824.1 115462449


Chromosome: 5 ,  position: 4,998,315 - 4,999,632 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atccattacc atcacagaag aaaattcacc ggtgaaaagg ttcagcactg tgcaatggcg 
000061 gcttccgtag gactgaaccc tgaagctttc ttcttcagca actcctactc ctactcctca 
000121 tcccctttca tggccagcta cacgccggag ttctcggccg ccgctatcga cgccaactta 
000181 ttctccggcg agctcgattt cgactgctct ctcccagctc cggcccagga gtacccggaa 
000241 aatgaaaaca ctatgtaaga aggtattttt ggtgttggat atattgattg attgatggat 
000301 taaaattggt actgaattgt ttttgtttga tttgatttta ttaggatgag gtacgagagc 
000361 gaggagaaga tgagggcgag ggtgaacggg aggatcgggt tcaggacgag gtcggaggtg 
000421 gagattcttg atgatggctt caagtggagg aagtacggca agaaagctgt caagaacagc 
000481 ccaaatccaa ggtacacgaa tattgacgtc actgccacta tgcccatttg gctatcaatc 
000541 ttaattaatt agtaccacaa gtttaatcac tagcttaatt actggcgttc tggccaatca 
000601 aagttttata atcacctttt ctgaaatatc atctgttcag ggttaaaaat tttagaatgc 
000661 aaaaaaattg cggagatttt gaactgaatt ttcagacaaa ttttgtaatt tgaacaggtt 
000721 ttcactttac ttgaaccgaa tttgagaaaa ttcaatcaaa ttcagagtgt ttggtcggta 
000781 ttacttccta ccgggactca ctgatagacc caaattgaat ttcattctga aaactgtaaa 
000841 ccttaggagt gcttcggacg aaatttcgtt ccaaattaaa tttgcattgg atgatgaaat 
000901 tcatcaatct ccctgtcaat tttttcagaa actactaccg gtgctcgacg gaggggtgca 
000961 acgtgaagaa gcgagtggag agagaccggg aggaccaccg ctacgtcatc accacctacg 
001021 acggcgtcca caaccacgcg agccccgccg ccgccgccgc ggcgctgcag tacgccgccg 
001081 ccgccggcga ctactacagc ccgccgctca gcagcgccgg ctcgccgccg gccgcctatt 
001141 cggcaggcgg ctcgctgctc ttctgaggct gatgagtttg tctagtacta gacacgcccg 
001201 ggagctctag ctaggataga aaactagaga aagtttaatt atacctgaat tttaattaat 
001261 cacctcacaa aactctgatg tatcatatta tatcgtgata gtgactgctt gttaattt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY836898 baet114d08 510
more... (Total Hit Count: 5 )
/rice/oryzabase