cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK065288     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0468700 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 23,106,291 -  23,110,434  ( + ) ;   4,144(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 23,106,291 -  23,107,165 ( + ) ;   875 (bp)
Exon 2 Location 23,108,370 -  23,108,655 ( + ) ;   286 (bp)
Exon 3 Location 23,109,640 -  23,110,434 ( + ) ;   795 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os05g0468700 Os05t0468700-01 J013002M22 200633 J013002M22 596 LOC_Os05g39240.1 AK065288 25328 AK065288.1 32975306 BAG89450.1 215694433 NC_008398.2 297605017 NM_001062336.1 115464402 NP_001055801.1 115464403 Q84KJ7 AMT21_ORYSJ


Chromosome: 5 ,  position: 23,106,291 - 23,110,434 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gatcgattcc cctcttcgag cccgtaccaa ttattagcta gtttaactcg tacgatgaat 
000061 cacgccgaaa cacaatataa atggtggagt cggctcgctg tcaaacgcgc gggagctcgc 
000121 gccacttgta atttttcgcg tctcctctcg tccggcacag cacaggagcg cggacttgaa 
000181 gacctcaagt agcgattcgt ccgtgcggcg cggcgcaaga agggaaggga aggggactag 
000241 gggagggcga gatggcggcg gcgggggcgt actcggcgag cctaccggcg gtgccggact 
000301 ggctgaacaa gggggacaac gcgtggcagc tgacggcgtc gacgctggtg gggatccagt 
000361 cgatgcccgg gctggtggtg ctgtacggca gcatcgtgaa gaagaagtgg gcggtgaact 
000421 cggcgttcat ggcgctctac gcctacgcgt cgtcgctgct ggtgtgggtg ctggtcggct 
000481 tccgcatggc gttcggcgac cagctgctgc cgttctgggg caaggccggc gtggcgctga 
000541 cccagagcta cctcgtcggc cgcgccacgc tgccggccac cgcgcacggc gccatcccgc 
000601 gcaccgagcc cttctacccg gaggccacgc tggtgctctt ccagttcgag ttcgccgcca 
000661 tcacgctcgt cctcctcgcc ggctccgtcc tcggccgcat gaacatcaag gcctggatgg 
000721 ccttcacccc gctctggctc ctcctctcct acaccgtcgg cgccttcagc ctctggggcg 
000781 gcggcttcct ctaccgctgg ggcgtcatcg actactccgg cggctacgtc atccacctct 
000841 cctccggcat cgccggcttc accgccgcct actgggtacg ttcgtctctc gttttttttc 
000901 ctttctttct ttctttcctc tcctcagttg gatcacatgt cattgtcgga atcatgacgt 
000961 cacccacccc ggtttttttg atccggcgac ttcactgttc cggcgtctcg ggtttgtcca 
001021 acgcgtgtta ggtactggta ctaccctgta ccatttgttt gacccatcaa tctggattcc 
001081 tcatgagaat gcatcacact ccatgacaaa attctcaata gaatttagtc gtagtacgta 
001141 caatgtctag accagaaatt acttcatgtt caaagtcacc atgggggaaa attagtagaa 
001201 aataatggaa atcaatgcat cagctggttg tagatttttt tttctaccct ttgggaagtc 
001261 acatgatacg tagcatcaca ttgccgctga taggctgata gctgcaccca ataaaagggt 
001321 taaaacacct tttaccacat ggaatgtgtg aacattggac cgcgtccatt tgcttcggct 
001381 ggtgggcggc ggtgatggct gccgctgcct gccgtgcccg gaagacttcg ttggcgcgcg 
001441 ctccattttt tttccttcct tttgttcttg cggttgctgt tgtgtttggg gtcgcaatcg 
001501 tgtgtgccac tttgcagcag caagcagata cacgcgagct tattaagaaa tggtgtggtt 
001561 ccacaccaac accaggaaat tcagtctagc gtcgtggccg gaaatttatt atctcgatcg 
001621 ttgtcgtcga tagtaactgc acgctaaaat atctggtgat attgcttctc gtgttatcca 
001681 acttgtgtgg ctaatggttt gggtcaagaa tagagaaaac ggcaagttaa aaatgggctt 
001741 attttctgag tttcttttgt gatcggacta tctgaatttt gcaaggactg tactagctag 
001801 gcacgtttgg aatgaaaatc tttttccgta ataatccgaa aataaacttt ttctacaaag 
001861 tcgaatagaa tcatcttgcg cgttgaattt tgcaaggact gtactagtta gtagcttttt 
001921 catgcacgga tggtttttta cattaaaaat tttgacacct tgagttacct accaaatttt 
001981 ataatttaaa aatgtatgac tcctaatata ttttcaaaga tgctaaaacc accctttaac 
002041 caatcgtcca ttaagacttc taatgcgtgt ggctggcagg tggggccaag gctgaagagc 
002101 gaccgtgagc ggttctcacc gaacaacatc ctgctgatga tcgcgggcgg cgggctgctg 
002161 tggatggggt gggccgggtt caacggcggc gcgccgtacg ccgccaacat cgcggcgtcg 
002221 gtcgccgtgc tcaacaccaa cgtctgcgcc gccaccagcc tcctcatgtg gacctgcctc 
002281 gacgtcatct tcttccgcaa gccgtccgtc atcggcgccg tgcagggcat gatgaccggc 
002341 ctcgtctgca tcacccccgg cgcaggtacc atcacgaaaa atctccactc cttataattt 
002401 ctgaatttat catgtcccat ttagaacacg gagattttat atatttgaaa tgataaaata 
002461 ttaatagtgg taatgttcgt tatttcacat catccctaat cccctattac tgatatttga 
002521 gccttacaat caacgagtct atcaacgagt cttcttccat tttattattg gctctttcta 
002581 aatttcgaaa taacctaatt gattgtgaat atgttattaa ttgacttagt aagctataaa 
002641 agggagaata gctaatatgg tccttaatct ttcatattgt acaaacaagc cctttaattt 
002701 tgtcatatgt gttatatagt ccttggtctc accaaaatcg tcacatagat atgccatgtc 
002761 acattcctat gcaaaatcta tatgatttgt ccaatttacc ttacatatat cataggaaaa 
002821 taaaaaacaa aaggtaaaat ataagagcaa aaatatacct caaaagggtg aaaaaaagga 
002881 taactatttt ttcctatagt tatgtctaat tcacccttat atttattttt ctacgatata 
002941 cacgtaaggg taaattggac aattcatcat agattttgca taaatgatga catggcatat 
003001 ccatataatg attttggtgg atccaagaac tattctagac cttatgacaa agtttaagga 
003061 tttctttaga ccatttaaaa ggttagggac taaactgatc ctacagaaaa actttaggga 
003121 ctaaagtagc tattctcccg ctataaaaac tcttctttct tttttgcaac gcacggttcc 
003181 tggctagtct tggaatgatt ctacatttat atccgaggca aataaaaaga agtttcgtat 
003241 gtttttaggt ccggttttgc aattgttgtc ctatgctgcg ttgtgcttgt gcttattttt 
003301 ccaaatgtca gcagtaattt gttggtttta ttcacaattg tgtaagcagg gctggtgcag 
003361 acctgggcgg ccgtggtaat gggcatcttc gccggcagcg tgccgtggtt caccatgatg 
003421 atcctgcaca agaagtcagc gctgctgatg aaggtggacg acacgctcgc cgtgttccac 
003481 acccacgccg tggcggggct cctcggcggc atcctcacgg gcctcctggc caccccggag 
003541 ctcttctccc tcgagtccac ggtgccggga ctccgcggcg cgttctacgg cggcggtatc 
003601 aagcagatcg gcaagcagct cggcggcgcc gcgttcgtga tcgcgtggaa cctcgtggtc 
003661 accacggcca tcctcctcgg catcggcctg ttcatcccgc tgcggatgcc cgacgagcag 
003721 ctcatgatcg gcgacgacgc ggcgcacggc gaggaggcct acgcgctgtg gggcgacggc 
003781 gagaagttcg acgcgacgcg gcacgacctg tcgaggggcg gcggaggcgg cgacagggac 
003841 ggccccgccg gcgagcgcct ctccgcccta ggcgccaggg gcgtcaccat ccagctctag 
003901 gcgcgccacg ccacgccacg ccgcgccgcg ccgcggcctg gcctctaatt acacgcgcgt 
003961 ttgtactgtt tttggacgtg ttattgttta ggagtagtga agtgaaccaa cgattgactg 
004021 caaggtgaag ggtgagaacg cgagagacca gaccactata gtctatagta catatggatg 
004081 ctgtaatgat gttgatccga gttcgttttt ccaacacgat aaaggccgac atgcctatta 
004141 aatt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AK252569 FLbaf156f20 1734 view details
/rice/oryzabase