cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK065280     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0213500 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 7,034,333 -  7,036,559  ( + ) ;   2,227(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 7,034,333 -  7,034,676 ( + ) ;   344 (bp)
Exon 2 Location 7,035,068 -  7,035,286 ( + ) ;   219 (bp)
Exon 3 Location 7,036,028 -  7,036,559 ( + ) ;   532 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0213500 Os05t0213500-01 J013002L23 200622 J013002L23 585 LOC_Os05g12260.1 AK065280 36888 AP008211.2 255675924 BAF16837.1 113578474 NC_008398.2 297605017 NM_001061458.1 115462646 NP_001054923.1 115462647


Chromosome: 5 ,  position: 7,034,333 - 7,036,559 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aagcaaaccc aacccaccgc taccctcttc tcgccgcaag cgaggcgagc caagcaaacg 
000061 cgaggccgac gacgacgacg aggaggagga agcgcagcca ctagtcgcgg cggcggcggc 
000121 ggcggcggcg gcgggtgatc ggaggaggga tggtggggct tgtgggagga ggaggttgga 
000181 gggtcgggga tgatgcggcg ggtgggggtg ggggaggagc ggtggcggcg ggggctgcgg 
000241 cggcggcgga ggcggagcac atgcggaggc tccacagcca cgcccccggc gagcaccagt 
000301 gcagctccgc gctcgtcaag cacatcaagg ctcctgttca cctcgtgagt tccacgactc 
000361 acgacgcctt ccatcctctt ttttttttct gttcttcgtt tggtgtttgt tcgattggtt 
000421 gcgtttggtt tggctacttg gctcggtggt tgctccttgg atctgaattt tttttatact 
000481 ttgttttggc gctgggtttg gtgctcgtgc ggctcggttt gatgcgtagc tgttgcctga 
000541 gatatttgtt cggttgattg gtactagctc gaattgaatg tgcgaatttc gccgtgtttt 
000601 tggccgctcg agatcccaaa attgtatggg atgttttgac ttgtttcttc gcggcatctg 
000661 cttggttgat tgtattgttg gtgatgggag tatttgattg tttgatcgat tgatcgatcg 
000721 ctgctgctgc tgcaggtgtg gtcgctggtg cggagcttcg accagccgca gaggtacaag 
000781 ccgttcgtca gccgctgcgt cgtgcgcggc ggcgacctcg agatcggcag cgtgcgcgag 
000841 gtcaacgtca agaccggcct cccggcgacc accagcacgg agaggctcga gctgctcgac 
000901 gacgacgagc acatcctcag cgtcaagttc gtcggcggcg accaccgcct cagggttcgt 
000961 gccactcgat actgataccc atttctgtct actgctctgc ttttttttgt ccctttttag 
001021 attagataat gtgctctgct tatttctgcc ttcttaatta ctaatccagt atgattggct 
001081 cactgcaagt atatcattta tgccttctta attactaatc cacagtatga taaactcact 
001141 gcaatccagt atttttagaa atcttgtttt ctgttttatc ttggtagcaa atgtttggca 
001201 ttataacctc tgcatatggc atgcctatct agatttagaa tggatatggg ttctggaagt 
001261 cacattggtt catccatcgt tttgattgga tcagatgata gataaccttg tgcttcatta 
001321 tttgacctac taatttctag gaagtaatat aatcatgagt agttttgact tccactaggg 
001381 atagaatgaa aaaatggaca ctgggaaact caaccctgtt ttccctgttc ttcatttggg 
001441 cttcagttta atgatttgcg atgtgaattc caatacgtcg tctgctttct tgaaaggcaa 
001501 tgacctacta gtgtggtctg catgtggcct tgctgtttct tgaaccttac ttgaaaaata 
001561 agttgaccat gttgccttaa ttgaagaata atgattttag gttcttgttt atggacagct 
001621 aggcactcat gatctttacg acttgtcaaa gctttatttt gatttgtact gatttctgtc 
001681 tccccactcc ttcagaacta ctcatccatc gtaactgtcc atccggagag catcgatgga 
001741 agaccaggga cgcttgtgat tgaatcattt gtggtggacg tgcctgatgg aaatacaaag 
001801 gacgagacat gctactttgt cgaggccgtg atcaagtgca acttaacatc tctcgccgag 
001861 gtatcagagc ggctagcagt tcagtcaccc acctcgccac ttgaacagta gggtcatcac 
001921 tggcacggga catgcgaact ggcatgaata agaagcttca aatggttgct agagatttaa 
001981 atctttttga gatggtagtt cctccattgt cttcgatata tatgcctctt gtaaggatta 
002041 gtatgtaggg ttaattatct ttagttgctg gctagtgatg ggcttaggtc tttttaggga 
002101 ctgcacctag ctaccttgta gttatgtatg catactgcta gtagtatgtg tataaatagg 
002161 gaagcatgga gtggtttttg cctctttggt gcacatgtga aacaacctca agagttcttt 
002221 ttcctgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs  
Acc. No. Clone Name Length
CJ941866 whchan3g06 801 view details
/rice/oryzabase