cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK065272     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os05g0552300 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 5
RAP - Location, Length 27,575,551 -  27,577,859  ( - );   2,309(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 27,575,551 -  27,575,807 ( - );   257 (bp)
Exon 2 Location 27,576,899 -  27,577,859 ( - );   961 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
RNA Nucleotide
Accession No
RNA
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os05g0552300 Os05t0552300-03 J013002L07 200613 J013002L07 578 LOC_Os05g47890.1 AK065272 4539 AK065272.1 32975290 BAG89443.1 215694426 NC_008398.2 297605017 NM_001062789.1 115465308 NP_001056254.1 115465309 Q6L4F8 GBLPB_ORYSJ


Chromosome: 5 ,  position: 27,575,551 - 27,577,859 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 agccttcccc tcctccgccg ccgccatctg ccgtcgagag ccccggttgc ccacccccgc 
000061 ggcgacgatg gcgggccagg agtcgctcac cctggcgggc gtcctgcgcg gccacaacga 
000121 catggtgacg gcgatcgcgg cgccgattga caactcgccc ttcatcgtct cctcctcccg 
000181 cgacaagtcg ctgctggtgt gggacatcac caacccgtcc accgccgtgg ccacggatcc 
000241 cgaggcggcc ccgccggagt acggcgtctc gtaccgccgc ctcaccggcc actcccactt 
000301 cgtccaggac gtcgtcctca gctccgacgg ccagttcgcg ctctcgggat cctgggacgg 
000361 cgagctccgc ctctgggacc tagccaccgg ccgcaccacc cgccgcttcg tcggccacac 
000421 caaggacgtc ctctccgtcg ccttctccgt cgacaaccgc cagatcgtct ccgcggcgcg 
000481 cgacaacacc atcaagctct ggaacaccct cggcgagtgc aagtacacca tcggcggcga 
000541 ccatggcgcc ggcgagggcc acaccgggtg ggtctcctgc gtcagattct cccccaaccc 
000601 catggccccc accatcgtct ccggctcgtg ggatcgcagc gtcaaggtct ggaacctcac 
000661 gaactgcaag ctgcgcacca agctcgaggg ccacaacggc tacgtcaacg ccgtcgccgt 
000721 gagcccagac ggctccttgt gtgcctccgg tgggaaggac ggaaccaccc tgctctggga 
000781 tctcaccgag gggaagatgc tgtacaagct cgacgccggc gccatcatcc actccctctg 
000841 cttctcgccc aaccgctact ggctctgcgc cgcgacagag gactccgtca agatctggga 
000901 cctcgagtcc aagctcgtca tgcaggacct caagccagaa gtccaggcct tcaagagcca 
000961 ggtatacctt ttgcactttg cctctctcgt tagccttgct tgtcacatgt atcgtgcatt 
001021 cgttgctgcc tgaatctgaa taggatgtac cgcgtgatgc atgttctgtc gttctgtctg 
001081 attaggatgt attgtgtgat tcgttccatc gtggttctcg cgtgttgcat tttggattcc 
001141 tggtgctatt attgttacgc ccttcaattt atcaggatcc tctgtagtag gatagggtag 
001201 ttttgatgct tattaagctc attgcgagca ggttatccaa tttaactcac agcatcatgt 
001261 tcatgtggtc aagcatcaca tgtacgtatg ttatcagcag gtcatataca taattagtcc 
001321 cgctgattta tatttctagg taccgaatcc tctgttctgt gttgatctaa tgatctaatc 
001381 agttttatga tctgttctca gtaatacgta ctcatcaatg atgctgttga tgtttatgct 
001441 catcccttct ccactgaatt gtatacatgt atttatatta ctatatacta agtagatata 
001501 aaatgctgca ttttatttgt ttacatgtta gtttcatcaa ccatggtgct gattggtccc 
001561 tcatgtgcct gtgtaactat ttggaaacca gcatttcggt atacctctgc atatccttgt 
001621 agagctgtag caatattagt ctctgctata agtaattcaa tttaacttca aactataatt 
001681 tgaccgcacc ttctcactag agtggtacag ttttgacaaa gttgatcttt acaccttgaa 
001741 ttttgtgtta gttttgcaaa cttttcttaa tgttatgttt tgtttatttt ctaccacgga 
001801 aaccttttct gttacagttc tcatacccct tttgattgag cacatgcaat ttgttataga 
001861 ggatgtgcat tctccttgaa atctcaatag tccttaaatt gttctattgt gcactttggc 
001921 tgtttccccc tagacttata ttctactgtg caccttgtat taatatgtat tcaattcttt 
001981 aactgaactt gattacgcat ttattttcct taaaaagaat gtgtactgac acctgccgtt 
002041 acatttgctt agatgctgta ctgcacaagt ttgagctgga gcgctgatgg cagcaccctc 
002101 ttcgctggct acactgatgg aactatcagg gtttggaagg tctcagggtt tggcggctat 
002161 gcaatctagg tggtgaattt gttgaaaggc ttaggaatct taatttaaac atcgtgatgc 
002221 ctatcaagtt tttgacagtt ctgaggcata acatttgcct ggtactttct acttcatttt 
002281 cattaattaa tgattagatt tgccaatga

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY844645 bart09f04 523
more... (Total Hit Count: 60 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ786936 whatl16a13 863
more... (Total Hit Count: 272 )
/rice/oryzabase