cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK064884     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os05g0134000 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 5
RAP - Location, Length 1,974,069 -  1,977,838  ( - );   3,770(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 1,974,069 -  1,974,543 ( - );   475 (bp)
Exon 2 Location 1,974,644 -  1,975,000 ( - );   357 (bp)
Exon 3 Location 1,975,088 -  1,975,183 ( - );   96 (bp)
Exon 4 Location 1,975,260 -  1,975,310 ( - );   51 (bp)
Exon 5 Location 1,975,402 -  1,975,542 ( - );   141 (bp)
Exon 6 Location 1,975,622 -  1,975,678 ( - );   57 (bp)
Exon 7 Location 1,975,797 -  1,975,871 ( - );   75 (bp)
Exon 8 Location 1,975,957 -  1,976,229 ( - );   273 (bp)
Exon 9 Location 1,976,336 -  1,976,395 ( - );   60 (bp)
Exon 10 Location 1,976,510 -  1,976,602 ( - );   93 (bp)
Exon 11 Location 1,976,682 -  1,976,868 ( - );   187 (bp)
Exon 12 Location 1,977,686 -  1,977,838 ( - );   153 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Os05g0134000 Os05t0134000-01 200143 J013000K07 142 LOC_Os05g04340.1 AK064884 36408
Os05g0134000 Os05t0134000-01 200143 J013000K07 142 LOC_Os05g04340.2 AK064884 36408


Chromosome: 5 ,  position: 1,974,069 - 1,977,838 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 tctccctccg aatcctcccc cgcattccgc gccggagctg aggagggaca gcgagccagc 
000061 gagggaggtg gggcaatcca gcgagcgcca gatcgtgccg ccagccccgc tccgtcctct 
000121 ctccggcgac cctccgcccc gcctgatccc gtggtaaatc cctctcgcct ctgtttcttg 
000181 gatcccgtgg ttcttctctc tgcttgttct tgcccgattc gacggttgac gcggccgtgg 
000241 ttgctcttgg atcgtggctt ggttggattt ttctttttca aggggtggaa gggaaagctg 
000301 gttctttttt tttccttctt tttctttttt ttttttggtg tgtgtgttcg tttgttcttg 
000361 tgattttctt gggggtgggg aagatggtgg cggtttccga ggtcggatcg gatacttgtt 
000421 cgtcctgctg attttgcatt ttgatcggtg attctggtgg ctttcttcta tttggatgat 
000481 gcgtgtgatt ggagggagat gagttgatgg gggaaagatg gtttagtttg gttgatgcaa 
000541 aatttggtgg tctctggatc ggtgaaatgt tcccttctct tggctgttat ggatagcaag 
000601 catgggtgga tgaactggtt gattcttgaa agctaccgcc tcgggataat ctcccaatga 
000661 tcgtggttga aaatatcatg ataaacgggg ggtaattggt acagattagc attctaatat 
000721 cttcagattc tgtgtttcga ttgagctaga aaagtaacac tccagttttg ataacaactc 
000781 ggcatccatc atggattccc aaagtttcat ttcttctttt tttttctttt cctgtacctt 
000841 caagcctacc tgccaattgc caacacaaac tgtctgtgaa tgtgcttctg gcacctaatc 
000901 tcatcacatc tttcttaagt aaaaacactg ttgtgacttt gacttaccat tattatgctg 
000961 ttgtttgcag gtggatcaac tacaactcat ctttaggaaa gcctcttgaa cattagcctt 
001021 gtgtgccttt caacagtatg gcctcggtag gtgtggtgcg ttcttccttg gggtttcaga 
001081 acgaaacaag tacaagtggc gatgccgacc gacttccgaa tgagatgagc aatatgagta 
001141 taagggatga taataaggta ttatgcctaa gagtggtgga tcatagttgc cttttgctgt 
001201 attgtcagtt gctgatttga ttcacaaacg tcgcaggaca ttgacgacat agttgtcaat 
001261 ggcaatggga cagaacctgg tcatgttatt gtgacaagca ttgatggaag aaatggacag 
001321 gctaaacagg tactgttcac aaaacaagca caagtgatat tatgctgatc cttttgtgtc 
001381 catttagtgt tgcctgggaa cacaataagt ttttgttcac tgaattatct atctacattg 
001441 cagaccatta gctacatggc cgagcgtgtc gtaggtcatg gatcctttgg aactgttttc 
001501 caggtttgtc tttagacaga tcgatttatg ttgcacttgt tcagtgtgtt aatttgtgtg 
001561 ttctggtggc gattgatgaa cccttcattt cttgaatgat cttgtatagg ccaagtgcct 
001621 ggaaaccggt gagactgtgg ctataaagaa ggttcttcaa gacaagagat ataagaaccg 
001681 tgagctgcaa acaatgcgag ttcttgacca cccaaatgtg gtgtcactaa agcattgttt 
001741 tttctcaaag actgagaagg aggagcttta cctcaatttg gtgcttgagt atgtgccaga 
001801 gactgctcac cgtgtaatta aacattacaa caagatgaac caacgcatgc cattgatata 
001861 tgcaaaacta tacatgtatc aggtaacgtt acacacctag atcttctaat ctatcctagc 
001921 acaattatgc attgagtata acatggaaaa cctattataa ttgacagata tgcagagctt 
001981 tggcgtacat tcacaacacc attggcgtgt gtcacaggga tatcaagcca caaaatcttc 
002041 tggtatgtta catacttgca tttagttata atctgttttc cacttattga agctttgtgg 
002101 agttagtcaa gtactaagtt ttgtttagtc agatggttgc taaaagatta ttacttccag 
002161 gtgaacccac atactcatca gctgaaatta tgtgacttcg gcagcgcgaa agtcttggta 
002221 tgatcactca ttaccagata ctcacacgaa cattgccatt gtctgttgta cctaatcttt 
002281 tgttctatta ttataggtaa aaggagaacc aaatatttct tacatctgtt caaggtacta 
002341 cagagctcca gagctcatat ttggtgctac tgaatacaca acagcgattg atgtttggtc 
002401 tgccggttgt gtgcttgctg aactcctcct ggggcaggta agagatcaca ttatttacat 
002461 gaggcttttg gaccatccag ctcattgcaa ctgtctgcct aagctttatc ctttttttgt 
002521 tttaaaagcc tctattccct ggcgacagtg gcgttgatca gcttgttgaa atcatcaagg 
002581 taaattatat cttgcttcca tcgaaatcac tccctttttg ttgtttacct cctacttaac 
002641 tgactattct ctcaggttct gggtacccct acacgagagg agattaagtg catgaaccca 
002701 aattacaccg agtttaaatt tccgcaaatc aaagctcacc catggcacaa ggtagaagaa 
002761 aataatctta tgttggactg tttatttttt attttagggt tgaaacctaa tgtagctttc 
002821 cttttttttt accaccagat cttccataaa agaatgcctg ctgaagcagt cgatctcgtc 
002881 tccaggcttt tgcagtattc accatacctc cggtccactg ctgtgagtgt tgtcgttgca 
002941 ctatttgagc caacaccatt ttttagagaa agttttagtt cttggcatca ctattgtgtt 
003001 acatttttct aattacttca tcatacaaac atgcactgcc ttgccaagta ctagtagtta 
003061 cagattgtgc atttctttat ttgccattac agtcggaagc attgatccat cccttcttcg 
003121 atgaactccg tgatccaaac acccgcttac cgaacggccg tttccttcct cctctcttca 
003181 acttcaagcc ccatggtaag cttgcaacac cggctgacat atgacatgcg tagacgaaaa 
003241 tttctgaacc accgatcaac ttataattat ctactaatct ggccgatttg aacagaactg 
003301 aagggtatgc caatggaatt cctggtgaag cttatccccg aacatgctcg aaagcaatgc 
003361 gcgtttgtag gatggtgatt tctgaggtca gcatgaaaac tagttcagaa tttcttcacc 
003421 gtcctccatt agaaagcaga gatgaaccct gtgtgcagcc atttgggaaa gctggtgcat 
003481 atggaagtgg aactacattt ttttgtccga gattctgacg ccgcgtattc ttttcccccc 
003541 tcccactttg ctgctgccgg tgtaaccaaa aaatcatcca cggttctgta aagttgatga 
003601 agaagagtgt aaaatcaggt tgaaaactga attcgatcgg tttgtcaaga ttgtagcaac 
003661 atgcaaggaa ggatgttgca cactttgtat ggcaatgttc gttcggtcca aatatttgga 
003721 catggatcga gaggctattc atttaattgt acttgctgct acatgttctt 

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ472370 baal33p24 672
more... (Total Hit Count: 20 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ926369 whchan2o23 808
more... (Total Hit Count: 118 )
/rice/oryzabase