cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK063677     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0349800 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 16,547,589 -  16,548,505  ( - );   917(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 16,547,589 -  16,548,169 ( - );   581 (bp)
Exon 2 Location 16,548,277 -  16,548,505 ( - );   229 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os05g0349800 Os05t0349800-01 001119E02 106678 001119E02 12389 LOC_Os05g28210.1 AK063677 19906 AP008211.2 255675924 BAF17187.1 113578824 NC_008398.2 297605017 NM_001061808.1 115463346 NP_001055273.1 115463347 P46520 EMP1_ORYSJ


Chromosome: 5 ,  position: 16,547,589 - 16,548,505 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 agctcaagcc gcagaagaca tacacacaca aacacaagcc acccttccga tttgttcatc 
000061 gatcagttcg cagcgtacgt caggctagct aactagtgtt tggcaatggc gtccgggcag 
000121 cagcagcagg gcaggtcgga gctggaccgc atggccaggg agggccagac cgtcgtcccc 
000181 ggcggcaccg gcggcaagag cctcgaggcc caggagaacc tcgccgaggg tatgcaaaat 
000241 aatactgaaa cttttgatag atcaaacttg ccatttcatt cggtatttcg gttgaagtac 
000301 gtaactaata tgcgtacgtg tgcatcgatc gatcagggcg cagccgcggg gggcagacga 
000361 ggaaggagca gatgggggag gaagggtacc gcgagatggg gcgcaagggc ggcctcagca 
000421 ccggcgacga gtccggcggc gagcgcgccg cccgcgaggg catcgacatc gacgagtcca 
000481 agtacaagac caagtcctag actacacaca cttttgcatc cgtgaatgcc agtgtgtcgt 
000541 agtcgtctca gttgtagtca tcgagtcagt cttagctagc tagctctctt atcaataata 
000601 atgtaggtct tgacggatgc acgcatttag gcgcccgtat gatttgctat gttatgtttc 
000661 atatggtgat gcgtgcttag ctttagctag ctttggtagt ttggtttagg tgctgatcga 
000721 tcatggtcag tagctagggt atgtgtttta gtttattgca ggatcggtca ggcaggggct 
000781 gaatgctagc taggtgatgc tttggctttt catggccagc agctgctagc ttcttgtttc 
000841 caactgatgc ctctgctggg tgtgtccttt gtaaccgtgc ttgctttcag ttaatctagc 
000901 tagctgttgt tcatccg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ530315 rwhec14g03 633
more... (Total Hit Count: 250 )
/rice/oryzabase