cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK063398     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0489700 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 24,159,658 -  24,162,948  ( + ) ;   3,291(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 24,159,658 -  24,159,922 ( + ) ;   265 (bp)
Exon 2 Location 24,160,112 -  24,161,107 ( + ) ;   996 (bp)
Exon 3 Location 24,161,406 -  24,161,477 ( + ) ;   72 (bp)
Exon 4 Location 24,162,552 -  24,162,948 ( + ) ;   397 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0489700 Os05t0489700-01 001114H11 106388 001114H11 12150 LOC_Os05g41070.1 AK063398 34192 AP008211.2 255675924 BAF17807.1 113579444 NC_008398.2 297605017 NM_001062428.1 115464586 NP_001055893.1 115464587


Chromosome: 5 ,  position: 24,159,658 - 24,162,948 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acatgcccca tttccacccc tcctatttcc tctctttcac gcatctcgac tccatctcac 
000061 tctcccccct ccctcctctc tcgctcgctg cgatctgcac tgctactccg gtaggtctcc 
000121 tccccccccc ccttcctcgc gcggccgcgg ccaccgccgg cgagaagccc gccgcggcgg 
000181 cgctgacccc ctccgcctct tcccgcgcgc ggccccgcca gccggccacc gtctcgggtc 
000241 aaatcgaatc gaatcgaatc caaaggtatt ctcttcgctc ttctcctccg cgggccgctt 
000301 ggattgatgg ctcggggtcg cgtaggtagg ggaatctgtt cgcgggttgg attgggttgg 
000361 gttggatttt cttctccttc ccaattagcc ccccgtccag tttgttctag atttctgtga 
000421 tgcgtctggt actgatggat gttagttttt gcagaggaaa atctggggtt cagttgaacc 
000481 ctaatgcccc caggttaggt cagcctcgct gggtatcgcg gctgctgagg ttacttggag 
000541 aggggtaggg tggaatcctc gggggctgat ttggtgtaat tgagagcgcc gattcatgat 
000601 tcaggcaatg gcttcgcatg ctggaggtag tggcggcggc ggcggtggaa gtggccggga 
000661 tgctggctcg gcgcagcgcg ggccgatgca ggggttggcg aggcaagggt cgctgtatgg 
000721 gcttacactc aatgaggttc agagccagtt gggggagccg ttgcttagta tgaaccttga 
000781 tgagctgctt aaaagcgtgt ttcctgatgg cgcggacctt gacggtggcg gtggcggtgg 
000841 cggcatcgcg ggccagtctc agccggccct ggggctgcag cgccagggga gcatcacgat 
000901 gcctccggag ctgagcaaga agacggtgga tgaggtgtgg aagggcatcc aggatgtgcc 
000961 gaagaggggt gctgaggagg gtggccggtg gaggcgggag aggcagccga ccctggggga 
001021 gatgacgctt gaggatttcc tggtcaaagc tggggttgtc acggatccga acgatttgcc 
001081 aggaaacatg gatgtggtag ggggcgctgc tgcggctgca gctggtacgt ctgatttgaa 
001141 tgccggagca cagtggctac agcagtatca ccagcaggct ttggagcccc agcatccaag 
001201 cataggtgct ccttacatgg caactcacct ggcacctcag ccattagctg ttgctacagg 
001261 tgctgttttg gatccaattt actccgatgg ccagatcact tcgccaatgc tcggggctct 
001321 ttctgatcct cagacacctg ggcgcaaacg ctgtgccaca ggggagattg cagataagct 
001381 agtagaaaga aggcagaaga ggatgataaa aaacagggaa tcagctgcca ggtcaagagc 
001441 gaggaagcag gtatgattaa tccttcctac ttagaatttt ctatatattg tatgctctta 
001501 ctttgcttat tataatttac tgctttcaaa cataaaggcc tcatggattc ttttttttta 
001561 atctctggat gtattaagtt ggcatttctc ttactcatac agtatttagt ctaatatatc 
001621 aatatatatg ttatatcttt ccaaagctgt aagaacatac cagttgcagt agcattggaa 
001681 tgccattttc cccttctttt atggatcatg tatatttatt tcaccgctgt gtgcattcta 
001741 actggcaggc ttacactaat gagcttgaaa acaaagttct tcgtctagaa gaggagaatg 
001801 agaggctaaa gaagcagaag gtactttctc tgctgttacc attgtactgt ttctattttg 
001861 tcattccttt agacaaatga tattccacta aggactactc cctgtgttat tatgttgata 
001921 tggctttgaa atactgttgt tgcacagtcg acaattcctg ttttatttta gctagttatt 
001981 tttttctctc gctatccact tgccacagtt gttacaccaa caggtccaaa gtggtaacag 
002041 ataactagat aagtgctata tacttttgta attgtgttag taatttctat ttgatctgtt 
002101 tacttaagga ttatgctatg ttctccttat aaatggcaaa tgtaccagat gtagttacta 
002161 ctatatttga actatgaaac aatcaaatga ggctttgatt ttgacttgct atatatgcaa 
002221 gtgcctttga ctttctaagg agacctatat gaagttcttg aggattttaa tcaacttatc 
002281 atgctacatt atactcctat atatcagcat taaatatgtg aaacactagt attgtcatca 
002341 ccaattttgc gcatcattgc aatcttttaa agtgtaaatt ttaaatgttg caatgttgca 
002401 tacattaaat cactgaacac ttaggtgggc ctcctttttt tggttgcctt ttatttatca 
002461 atcatggtaa tgatttatca accaaacatg ccttttctaa gatttttgca tatgaaacta 
002521 ctctgtatat ctgtagagct ttacgggtta tacatgtgct gcaattccat agtaattcac 
002581 caagatgctt gattcccatg cccttaactt tgggcctttt ccccttgaac agagacttga 
002641 tgctgaacaa agtcacaaac atctctctgt actattagca taatagaatt gatggcccgt 
002701 tgatatttga caaacggttt tatgacattc cattatagta tttcttacag tttagaaacg 
002761 aagtgaatca tgctgccctt gttcttgaga ttgggtaagc aagaccggca atgccattta 
002821 gcttatagca tcttgttact gttcattcat gttgatgtcc cttatgagat gattttgtcc 
002881 cccgctgttt ccaggagttg gatgagatac tgaactccgc gcctcccccg gaacccaagt 
002941 atcaactcag gcgaacaagc tcggccgcct tctgatggtg acgatgtcca tagtaaattt 
003001 tgtagattat atggggtctg cccacatatt tcgcatcctt tggcggtagg aacaatcgat 
003061 atagcttgag attccatctt ccccctccag ccggtggtgg tttagagctt gtaaacacca 
003121 gcaccagcag agccctagcc atgtcgcccc agctgctgat ctcttcggag gctttgtcac 
003181 ttgtcagtat gtaaattctc caaggcacgt gtcgctgtta agttctcaga gctccttggt 
003241 tatacatgat tgggcccttt gcctgtttct tgtggttggt tgatacttag t

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV914686 bags7j05 484
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ795679 whatl4n16 738
more... (Total Hit Count: 7 )
/rice/oryzabase