cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK061969     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0516800 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 25,722,119 -  25,724,157  ( - );   2,039(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 25,722,119 -  25,722,801 ( - );   683 (bp)
Exon 2 Location 25,723,873 -  25,724,157 ( - );   285 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0516800 Os05t0516800-01 001042H05 104823 001042H05 6033 LOC_Os05g44070.1 AK061969 5438 AP008211.2 255675924 BAF17962.1 113579599 NC_008398.2 297605017 NM_001062583.1 115464896 NP_001056048.1 115464897


Chromosome: 5 ,  position: 25,722,119 - 25,724,157 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcgagatcca aaatccgacc agccagcgtt agctcggaga ggcgaggcga gaatgtcggc 
000061 cgcggcgggc gggtacaggg cggaggacga ctacgactac ctgttcaagg tggtgctcat 
000121 cggcgactcc ggcgtcggca agtccaacct cctctcccgc ttcaccaaga acgagttcag 
000181 cctcgagtcc aagtccacca tcggcgtcga gttcgccacc cgcagcctcc aggtcgacgg 
000241 caaggtcatc aaggcccaga tttgggacac cgccggccag gagaggtacc ccctggtgca 
000301 cgcgctcgtg tagatttgtt ggaaaatgcg atcttggtta gcctcgtttg ctcgatattg 
000361 gggttctcgc gcagttgcgg gctttgcagc tgctcatttg ctcgctttct tgcctgttta 
000421 ggagctaaac ttgcagtgct attttggtac gagattgtga tctagtagtc atctagggaa 
000481 attgccatga gcctttggga tctggcatct cagcattggt gaaacgattc agttaaaaaa 
000541 aaaagggatc tgtgggtggt cgagtggttc agatttctct ggaagatagt cgagtgttca 
000601 gatgtccatt ggttgtttct actgggtaga tgggtggcaa ttttgatatt ggtggttagc 
000661 atgtcaaatt taggtacgtg ttacttgttt ttctgttcaa gggaggggag aaattgactg 
000721 ccctcctttg catacttttt cttcacaaaa cactgagaaa gtaaaggtgt gcatttgcta 
000781 aatgtgggtg aatcaatatg actacatgag ttcaagtgaa gctaatactg ctacacaggc 
000841 aggttggtac tccggatttt ataaagtgga gtatttgcta gagccatcgt gattcagctt 
000901 tggagtttag attatcagac gagtgctgat tatgaatgtc atatggcact cctaaacatt 
000961 atgcaaagaa tttgtcattg accaatatgt gaagaatttg acattcagca gctgcagtgg 
001021 tttctagata cagaccagtt taatcctgtc ctggtagtct agctctacga cgattcaacg 
001081 tcttcctgtg ctgaactgct gaatttgcag ttgccaccta ccagcagtga gtgagattag 
001141 catagagatg caaatattct gccaactaca tcctaggcta ggtgatacgt ccgttttcgt 
001201 ttactctgtc atcgctagaa aataaaatgg gggaggagaa tctccactca tcctatcttc 
001261 tcttgctatt ttaccttgcc tgtgttttct attttttgtg tgtcctgcgt gaagagctct 
001321 gtatttatgt agaactgtca tcctgtatct tttcaggtat cgtgctatca ctagtgccta 
001381 ttaccgggga gctgtgggag cattgctcgt ctacgatgtc acccgtcgtg ctacattcga 
001441 caacgtggga cgctggctaa gggagcttag agaccacact gatcctagca ttgtctgcat 
001501 gctgattggc aacaaatccg atctccgcca cttggtggct gtctcaaccg aggacggcaa 
001561 agagtttgct gaagccgaat caatgtactt catggaaact tctgcgctcg acgctaccaa 
001621 cgtcgacaat gcgttcgcgg aggtcctgac tcagatatac cagattgtga acaagaagcc 
001681 ggtggaggca cctgaggatg ggtcggctgg cccaggaaaa ggagagaaga taaacgtgaa 
001741 agatgatgtc tcggcgatga agagagttgg atgttgctca aactaaagac aagagggaca 
001801 caatttattc atttttccaa gtagggatgc tcagggtata ctgtaataga tctattcaat 
001861 tgtctcattt ctggtgttgt tattgagggt tagggtgatc caactatcat tcaaactatc 
001921 agttcttgat ttgctctttg tatcaaactg atcatggtgt tgttatctat cactgcaatg 
001981 caagtattat gttgacagaa gaagcatata tccattgttt gagagtgtct gctctgatt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248771 FLbaf5j14 1028
more... (Total Hit Count: 17 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ678006 whok11a02 734
more... (Total Hit Count: 159 )
/rice/oryzabase