cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK061818     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0584200 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 29,185,327 -  29,186,563  ( - );   1,237(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 29,185,327 -  29,185,765 ( - );   439 (bp)
Exon 2 Location 29,185,878 -  29,186,563 ( - );   686 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0584200 Os05t0584200-01 104620 001040B08 1388 AK061818 22238 AP008211.2 255675924 BAF18363.1 113580000 NC_008398.2 297605017 NM_001062984.1 115465698 NP_001056449.1 115465699


Chromosome: 5 ,  position: 29,185,327 - 29,186,563 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 agtgcagaga tgggatcgcc gatcagtgag cgattcggtg caggcaactg ataaggaggg 
000061 aggatctctc cgccgactca gcaccgtccg tttcgggacg tggtgccgtt ttggccccgc 
000121 gccgaagctt ctcccctttg cagttatcaa attccccttg cagccacgca gatttacgcc 
000181 gcgcccccac gcaacccaaa agttcagcgt aaacttgcct atcaacaaaa ctacagctca 
000241 ggcggccacg cgaaatcgcg aggtttcacg taccaaaagc gcaaaaatcc actcggattc 
000301 cacgcggccg agccactgca cgtgggcgcc cacgacgcgc ccccgtatcg atcggcaccg 
000361 cgctttcctc ctcctgatct tacccgctac tatatcatca tctgcttgct ttccccccga 
000421 gagtccacgg cctcctgctc ctctcgatcc aagataattt cactccagcg tgcgtcggcc 
000481 atgtcgagct tgatggacaa ggcgaaaggg ttcgtggcgg agaagatcgc gcacatccca 
000541 aagccggagg cgtcgctgga cagcttgtcg ttcaagggga tgagccgcga gtgcatcacc 
000601 gtgcacagca acgtcaacgt ctccaacccc tacgaccacc gcctccccat ctgcgagctc 
000661 acctacaccc tcaagtgcgc cggcaagtac gtgtcacagc tagcttttgc ttgtccgatc 
000721 gatgatccat ccatctcacg ctcgatcgaa ttgtgctaat tgtgtattgg tcgatttgga 
000781 ttgattggtc atcatcagcg ttgtggcgtc cggcacgatg cccgatccgg ggtggatcgc 
000841 ggcgagcgac acgacgaagc tggagatacc ggccaagatc ccctacgact tcctcatctc 
000901 gctggtgaag gacgtgggcc gggactggga catcgactac cagctcgacg tcggcctcac 
000961 catcgacctc cccatcgtcg gcaacttcac catcccgctc tccaccagcg gcgagatgaa 
001021 gctccccaca ctcaaggaca tgttctaatt atcttatctc taatctcatc aaccaactcc 
001081 gatcgatcga actctctgta tgtgtgatgt gtctcgcgaa taatggcagc tgctctgcac 
001141 ctgtgttctt cttgccctgc atagtatagc atggctgtat gagcggctga aaaattacct 
001201 ctattcctaa tggttgcaat aataagctag agaactg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV915268 bags13k05 646
more... (Total Hit Count: 17 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ816493 whsct29f10 624
more... (Total Hit Count: 189 )
/rice/oryzabase