cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK061521     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os05g0137200 ( IRGSP 1.0 )
RAP - Chromosome No. 5
RAP - Location, Length 2,169,604 -  2,171,494  ( + ) ;   1,891(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 2,169,604 -  2,169,868 ( + ) ;   265 (bp)
Exon 2 Location 2,170,112 -  2,170,375 ( + ) ;   264 (bp)
Exon 3 Location 2,170,464 -  2,170,757 ( + ) ;   294 (bp)
Exon 4 Location 2,170,856 -  2,171,494 ( + ) ;   639 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os05g0137200 Os05t0137200-01 006310B05 104137 006310B05 8167 LOC_Os05g04610.1 AK061521 26683 AP008211.2 255675924 BAF16498.1 113578135 NC_008398.2 297605017 NM_001061119.1 115461968 NP_001054584.1 115461969


Chromosome: 5 ,  position: 2,169,604 - 2,171,494 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gatgtatgaa gaggcaagcc aagtggcaaa tgatgcagtg agcagcataa ggacagtagc 
000061 ctcattttca gctgaagaga aggtaatgga tttgtacaag atgaaatgtg aaggaccact 
000121 aagaacagga atcaggacgg cgataataag tggtatcggt ttcggtgttt ctatcttcct 
000181 gctgtttgga gtctatgcag ccagcttcta tgccggtgct cggcttgtcg aggacaggaa 
000241 aacaacattt cctaacgttt tcagggtatg tgcagtgttc actacaagat atttacagac 
000301 tcaaactttt aaacttttta ggcacttgca tgtcaatatg ctagttgaag atttgcacgt 
000361 caatatgcta gttgaatata gatttttcaa aggggcattg agatttaaac ttcaaggtgg 
000421 ctagtttgtt ataaatgatg caatgcttag gcttagttaa atataatttc aaagtgaaag 
000481 atatcatatc ttgggcatct tattgcaggt gtttcttgct ctcacaatgg cagcaattgg 
000541 ggtgtcacac actagcaacc tcacatcaga ttcttccaag gcaaaatcag ctgtatcttc 
000601 tatattcgcc atcgtagacc gtaaatctag gattgatcca agtgatgatg ctggagtgag 
000661 cttagaacca ctaagaggcg atatcgagtt ccagcatgtg agcttcagat atcctacacg 
000721 accagatgtt cagatctttg aagacctgtg cttaacaatt caatctggaa aggtaccaaa 
000781 ctccctaatt tcagactatt aacctattaa caaacactat aaaggtatct gaaactaaac 
000841 ctaatgtttt tatctggcag actgttgctc ttgtcggaga gagcggtagc gggaaatcga 
000901 cagcgatatc attgcttcag aggttctatg atccggatgc aggccatata cttctagatg 
000961 gagtggacat tcaaaagttt cagctaaggt ggctaaggca acagatgggt ctagtgagtc 
001021 aagaaccagc tctgttcaat gacacgattc gcgcaaacat cgcgtatggg aaggaagggg 
001081 atgcgacaga atcagacatc gtatcctccg cgcaattggc gaatgcgcac aagttcatca 
001141 gctcattgca tcaggtgaaa ttcaaattcc cgtcccaacc agctcaccct cattcattca 
001201 gacattgtgt tcatgtttct gacagaaaat gtgttacctg aaaaaaatgc agggatatga 
001261 aaccatggtc ggggagcgtg gagctcagct atccggaggg cagaagcaac gcatcgcgat 
001321 cgcccgcgcc attgtcaagg atcccaagat cctccttctc gatgaagcca cgagtgcgct 
001381 cgacgcagaa tcggagcgcg tcgtccaaga tgcgctggac cgggtgatga tgaacaggac 
001441 cacggtgatc gtggcacacc ggctgtccac aattcagggc gcagacatga tcgcggtggt 
001501 gaagaacggg atgatcatcg agaaggggaa gcatgatgca ttgatcggca tcaaggatgg 
001561 agcttacgcc tccctcgtcg ccctccatgt ttctgctgct gccatttcgt agcagatcta 
001621 gcagacgcca tggatgaaaa gatcatggtt tgttgctgaa tctgtgagag gagcaagaga 
001681 ctggtgtaac tgtagcttgt gcaggctcca gctcttgtca tccagcagca gcagcagaag 
001741 aagaaaaatt tgatgaacac aaatatgtca tgtatacata gatagataag atcatacaaa 
001801 gatgtgcaaa tgtaaatgca acgagttgta tgaatgaatg ttcatatgat atgaagcaga 
001861 tgatgatgat gatatggata ttcattggca t

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ572936 rwhok17l10 806
more... (Total Hit Count: 2 )
/rice/oryzabase