cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK070463     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0823100 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 36,875,199 -  36,877,005  ( + ) ;   1,807(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 36,875,199 -  36,875,432 ( + ) ;   234 (bp)
Exon 2 Location 36,875,540 -  36,875,852 ( + ) ;   313 (bp)
Exon 3 Location 36,876,214 -  36,877,005 ( + ) ;   792 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os01g0823100 Os01t0823100-01 J023048M24 206262 J023048M24 5617 LOC_Os01g60770.1 AK070463 7815 AP008207.2 255672756 BAF06570.1 113534187 NC_008394.4 297598437 NM_001051191.1 115440752 NP_001044656.1 115440753 Q40636 EXPA2_ORYSJ


Chromosome: 1 ,  position: 36,875,199 - 36,877,005 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 caaccaagca accatcgatt cgatcctagc ttaagccgag tgaagtagct agcaggacat 
000061 tgttggtagt gtgatcttct ccctgttttg caacaatggc ctcacgcagt agtgccctgc 
000121 tcctcctctt ctcggccttc tgcttcctcg cccggcgagc cgccgccgac tacggctcct 
000181 ggcagagcgc ccacgccacg ttctacggcg gcggcgatgc gtccggcacg atgggtacgt 
000241 gtgcactgct cctcgtaaca ctttgttttt ttttcttttg gacgcattga caaaaccggg 
000301 agtaatctga ctcgtgtcgt gttgtttgtg tacatgaaaa ggcggggcgt gtgggtatgg 
000361 gaacctgtac agcaccgggt acggcaccaa cacggcggcg ctgagcacgg tgctgttcaa 
000421 cgacggcgcg gcgtgcgggt cgtgctacga gctgcggtgc gacaacgatg ggcagtggtg 
000481 cctgccgggc agcgtcaccg tcaccgccac caacctgtgc ccgccgaact acgcgctccc 
000541 caacgacgac ggcggctggt gcaacccgcc gcgcccccac ttcgacatgg ccgagccggc 
000601 cttcctccag atcggcgtgt accgcgccgg catcgtgccc gtctcctaca gaaggtgagc 
000661 tctacttggg tcaatgggtc acgagtgagt ggcaaactgt ttgcaacttg aagccatggg 
000721 ccccccgtgc ggtgtgtcgg cttcgatggg ccgatcccca atcggctgat caggccatgt 
000781 gtaggtgggc cacccggcag atttggtttg tccacgatct gtccgtgtcg gctgtaggca 
000841 aagccatgca cgcacgactt gacaccgacg tggacttgac ttcgctgtcc cggaattact 
000901 ttacgcatcc catttcacat ccatatgatt aatcgttgca acaaatagta acaaattaca 
000961 gttaattcta ctgtttcact gaactttgct tttttttttt gctggtgtgt tgcagggtgc 
001021 cgtgcgtgaa gaagggcggg atcaggttca ccatcaacgg gcactcctac ttcaacctgg 
001081 ttcttgtgac caacgtggcc ggcccaggcg acgtgcagtc cgtgtcgatc aaggggtcca 
001141 gcaccgggtg gcagcccatg tcccgcaact ggggccagaa ctggcagagc aactcctacc 
001201 tcgacggcca gagcctctcc ttccaggtcg ccgtcagcga cggccgcacc gtcaccagca 
001261 acaacgtcgt gccggccggc tggcagttcg gccagacctt cgagggcggc cagttctgat 
001321 cgagtactcg gctaattccg tttttcagtt cacttttctg cagaaatgtc agtgtgagat 
001381 tgagattgag gtggaggagg agggaggcct ctttgctata gtaaaagaga agaggctttg 
001441 gctattctga ggctgcttat taattagcac ccgcttaggc ctttgctttc tcccataggt 
001501 ccagtagaca taaataagtt atcatggagt tgggcatttt ttttttctgc attgttgtag 
001561 ccttggttta aaatttggca aggcaattta aggattatat tgtagaacag cagggaggtg 
001621 gtgtcttgta acttttgttg ttacattgta accccccgaa tcaggccaca tgggccggag 
001681 gagtttgtgg gggagcaccg gagcactctt gtgcttttgg gaccatgaac tatgctagtt 
001741 tatgggtcta tgtatatgat atgtttgtga tttgattata ctttcttttg tcgccttatc 
001801 aagtacc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ454545 baak24n09 654
more... (Total Hit Count: 35 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ819076 whsct36e15 906
more... (Total Hit Count: 35 )
/rice/oryzabase