cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK241774     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0560200 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 28,564,258 -  28,566,063  ( + ) ;   1,806(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 28,564,258 -  28,564,383 ( + ) ;   126 (bp)
Exon 2 Location 28,564,492 -  28,564,654 ( + ) ;   163 (bp)
Exon 3 Location 28,565,097 -  28,565,122 ( + ) ;   26 (bp)
Exon 4 Location 28,565,626 -  28,566,063 ( + ) ;   438 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 MSU ID cDNA
Accession No		 UniProt
Accession No		 UniProt Entry
Name
Os04g0560200 Os04t0560200-01 J065205N20 301135 J065205N20 LOC_Os04g47260.1 AK241774 Q7XSQ7 TRL33_ORYSJ


Chromosome: 4 ,  position: 28,564,258 - 28,566,063 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atcccctcgt ggcctcgttg ccgtcgtgcg cggtgcgcca cctccacggc gccgctcgcc 
000061 gtcgtcccct cccttcttcc cgtcctactc tctcggtgtg cgcgctctcc gcctccgcct 
000121 tccaaggttc ccctcgcgct cgccgtctcc tagatttgga ggaatttttt gtttctttta 
000181 tgtgtttgtt ttgagtcgta agaacaagga tttggttatc ctgacaccaa acagcgggag 
000241 caaagctgga aggatggaag agggggaggc caagaagaca ggcctggagg gcactgggct 
000301 gtcgctcccg ggcagctcac acggcaatct acggagcgcc ggcagcgacc agcagctgaa 
000361 gcagatgctg gactccctca aatcgtccaa atcacccgta agtatggctg ctcctccccc 
000421 tgcatccgcc ggcgacacct ctctgtttcc ttcctttaag agcacgcatg gaacaacatg 
000481 tattatccga tgctggtcag cttgaacagg tttagaggct gccaacgttt ttgtccttgg 
000541 gtacaattgg taggcacaat attgaattgg gataatttgt gttttttttt gttaagtgat 
000601 tttcacatta aatttagcta ctgcacaaac aaagccctcc tgcccgcagc ctattctaga 
000661 aatttggtgt atggtgttca tactgtcgta ttgaatcatc cgggtcgatt gctttcggtg 
000721 caaatgataa tgaaaaacat gagtaaatgc actatgctga tgtgattata gtatggatga 
000781 acatttgttg aagtccagga atttattttg attgaaattt ttggattctt cttttgcagg 
000841 ctgttatcaa ctatggtgcc tcatggtatg taacctctct ctcgccatgt gtcacttcat 
000901 agtttacgat ccagcgatgt gaagattata tattacgaag tgcaaataac ggttcatcaa 
000961 tctctggatt atttggtaac ttcatactag tattcatatt tgctgatgtg actatttgag 
001021 ttcaattgag taatcagcag ctgttaggag ttagcggttg tcatttgagt atgtatgcac 
001081 aagtatgagt atttaaacct gtaatattga ttatcctgat ggactattgg acatttagct 
001141 gcctaaggag ttaggactga ctagatttat gttatgcatt ggtttgacct caatatgacc 
001201 acctaacagc tatagaaaat cggtcatcat ttgctgtata ttaacatgtg taaagtcaaa 
001261 tttgtttagc ccaggatttt tttcctagca atcctgtatt ggttaacaac atataggata 
001321 ctgtatctct ttaactctgt gaattactca ttccctccgt ttatgcaggt gccgtgtttg 
001381 cagtcagatt cttccaccct tctgcaggtt cagcaatgaa ttcaagaatc ttaccttcat 
001441 ttatgctgat attgacgaat gcccagaaac aacacaaaac atccgataca ccccaacctt 
001501 ccatttctac cgggatggag agaaggtcga tgagatgctt ggtacaggag aagagaggct 
001561 gcatgaccgg ttatggttgc attcttgata gggatttgcc gggctgttgg tctcatgcac 
001621 aatattttct ctctctcttt tatcctactt tcgtgctttg ttgtcaacct ctgagccaat 
001681 tcaaggttta tgttggtgtt tgtaatgttg atcatggtca tctttagtga catacaccat 
001741 tatatatcag aattggtgta ccggtttttc tctcatgctt atgtcaaaac tgagaaagaa 
001801 taccgt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ450666 baak30k01 561
more... (Total Hit Count: 3 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ304471 whyd9d17 590
more... (Total Hit Count: 5 )
/rice/oryzabase