Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK121846 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os04g0682800 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 4 |
| RAP - Location, Length | 35,359,615 - 35,368,774 ( - ); 9,160(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 35,359,615 - 35,360,191 ( - ); 577 (bp) |
| Exon 2 | Location | 35,360,377 - 35,360,451 ( - ); 75 (bp) |
| Exon 3 | Location | 35,360,548 - 35,360,604 ( - ); 57 (bp) |
| Exon 4 | Location | 35,361,224 - 35,361,400 ( - ); 177 (bp) |
| Exon 5 | Location | 35,361,474 - 35,361,540 ( - ); 67 (bp) |
| Exon 6 | Location | 35,362,091 - 35,362,149 ( - ); 59 (bp) |
| Exon 7 | Location | 35,362,236 - 35,362,289 ( - ); 54 (bp) |
| Exon 8 | Location | 35,362,503 - 35,362,652 ( - ); 150 (bp) |
| Exon 9 | Location | 35,362,757 - 35,362,966 ( - ); 210 (bp) |
| Exon 10 | Location | 35,363,447 - 35,363,575 ( - ); 129 (bp) |
| Exon 11 | Location | 35,363,664 - 35,363,768 ( - ); 105 (bp) |
| Exon 12 | Location | 35,363,983 - 35,364,072 ( - ); 90 (bp) |
| Exon 13 | Location | 35,364,678 - 35,364,743 ( - ); 66 (bp) |
| Exon 14 | Location | 35,365,095 - 35,365,163 ( - ); 69 (bp) |
| Exon 15 | Location | 35,365,396 - 35,365,515 ( - ); 120 (bp) |
| Exon 16 | Location | 35,365,592 - 35,365,651 ( - ); 60 (bp) |
| Exon 17 | Location | 35,365,729 - 35,365,865 ( - ); 137 (bp) |
| Exon 18 | Location | 35,366,118 - 35,366,208 ( - ); 91 (bp) |
| Exon 19 | Location | 35,366,346 - 35,366,511 ( - ); 166 (bp) |
| Exon 20 | Location | 35,366,748 - 35,368,220 ( - ); 1,473 (bp) |
| Exon 21 | Location | 35,368,444 - 35,368,774 ( - ); 331 (bp) |
Chromosome: 4 , position: 35,359,615 - 35,368,774 bp |
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| Sequence (Data source : RAP-DB) | |
|---|---|
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Nucleotide
Fasta Format |
000001 gctctcctgc cctgcctcgt ctcctccgct cagctcagct ccggtccaaa ccaaaacaca 000061 cacacaacat aagaggcggc ggccctaaca aatcccaaga gacttccact gcacaaccaa 000121 cctagagcag ctttgagact tgagagtgag agctcgcgag tcgcgcacag actcaaacag 000181 aggcagagag agatgggaag ggaatgaggc ggcggctcct ctccccttct ccggtgacgt 000241 gacgacgccc ctctcctcct cctccgctgc cgcatccgag ttcataaacc ttcgtccctt 000301 ccgccccgcc atccgtcttc ccggaatccc ggtatgtaag ccccgccccc gcttcatcag 000361 ttcggtcgga ttggatgaac gcccattttt tgtggggacg ttcagcgtga tgtatcaacg 000421 attcaatcga acagccattg gttttttttc tcccgtgttt ctaatctaat gccgcttact 000481 ttttttagcc aaacattttg ttggattcct ccggggttct gatttgggtt tctgttgata 000541 ttgtgttcgt acagggggcg cgtggggatg gatttgtcta ggtttactgc cccgcggccg 000601 ggcttgcaga tcggcgccgc cgggaatggc ttccgggcat gctccctgcg gcgtctcagg 000661 tatcgtgtct gcggcgggaa ccccatgggc gcctccgccc tcggaggctg cggttcccgt 000721 agcctcttct acttggctcc aaaccatggg agccctcttg ccctccggac cagagggagg 000781 gcgctgaggt gccagggaaa tgactcactg gcctatgttg atggcccttt ggaaggtacc 000841 aatggctcag tagtcgataa taccgaggac gaagcaaaca gctctgggtt ggatgaggag 000901 aagggtgatg atgatgcaga aaatctcagg gacttgcttc agaaggcgag gaaagagctg 000961 gaggtggcca ggttgaacag caccatgttc gaggagaagg cgcagcggat atccgagtcg 001021 gccatcgcac tgaaggatag ggcagataaa gctcagagcg acgtctcttc tgccgtgacg 001081 accatacagg agatcatcag caaggaggct gatgccaagg aggctgtccg gacagctaca 001141 atggcgctct ccatggctga ggcccgcttg cagttggcgt cagaagctct ggatgccaaa 001201 aggggatcag tcgggccgat ggaagttagc attgatgatg tggaggagga ggcccttgcg 001261 tccgcgcaag aggagattaa ggagtgccaa gaaagtctgt caaaatgtga ggaggagctg 001321 agacgtatcc aagagaagaa aatggagttg cagaaggagg ttgatagatt gacggagctt 001381 gctgagaggg ctcttttgga tgcttcaaaa gctgaggagg atgttgcaaa tataatggtt 001441 ttggctgaac aggcagtagc tcttgagatg gaagctgcac agcgagcaaa tgatgcggaa 001501 ctagcattgc agaaagcgga gaaggccatc tcctcggttg atgccgtcgt agagttacca 001561 gcacctgctg aggagcaagt aagtgatgaa gaagacaatg tttctgaagt gtatgattac 001621 agcagtgatg ctatagatga tattcctgaa agagacgagg tgtcaaatgt tgagcgccta 001681 actgttgggg acttagctgt agaaggcatt gagcaacttg aatcatcccg tgaaatgtct 001741 gatgacgaaa gcactgacaa gttgcttgtt gagcctcaga aagaagccga acctgatata 001801 gataagtcaa agcaagggaa aaaacaggaa atagaacgaa aggagtctca gccatcgaat 001861 gctcctaaag catcactgaa gagatcatct cggttcttcc ccgcatcttt cttctcctcc 001921 aaagcggatg gagaatttac acctacatct gttttcaagg ggttgatgaa atcgactaga 001981 aagcatgcgc caaagcttgt tgttgggata gtgcttcttg gagcagggtg agttgcatag 002041 tgaataatat cttttctctt tggtttctgt ttgctagaaa gtaagaaaat tctgatttcc 002101 catatgtttg tatatttatg ctggatactg ttatagtttg tcatattttc tatctgtata 002161 atcaaataac tgaaagtact tgttcttaca acagttgaag tgatttcatt aatgttgata 002221 agccaattct ttatgaaacg gtgtttctat tctctgtcta cagagcattc ttcttaaatc 002281 gggctgagaa gagtagtcaa ttatttcagc agcaagaaat aaccacaagt attgaggaag 002341 ttacctccac tgcaaagccc atagttcgtg agatgcgaaa gatcccacaa cgagtaaaaa 002401 agcttattga gctcttacct catcaagagg tatgttccct ttcaactgaa cctgtacatt 002461 ggcgaattta tttccctttt ttgtgagtac attctcttgc tgctcacaca agttagacaa 002521 gaaatttggc ttgtgtctaa ctcccttctg ctctttgtta ccctaggtaa atgaggaaga 002581 agcttcactc ttcgacatat tatatttgct tctggctagt gttgtgtttg taccattatt 002641 tcagaaaata cctggaggtg atacatttat ttctgacatc tatatgtgca tagcatggta 002701 tcatggcaat caaactttcc ttatccatct gccttttttt tacaaatcat atcaaacaaa 002761 ttcgtctctg ttctactcta gttttagttt caagtttcaa ccgaacacta caaagtacaa 002821 acattcactt tgattttcta atttgaaata tctgaacgtt tgttcactgt ccgatatttc 002881 tttttctaat atgcaccttg atatcatagg tagtcctgtt cttggatatc tggctgctgg 002941 tgtcctaatc ggtccctatg ggctttccat catccgtcat gtccatggaa caaaagcaat 003001 tgctgaattt ggagttgttt tcttgttgtt caacattggc cttgaggtag aaactgagtt 003061 tcttttagat tctttcctta atcctcatgc aggatatatc agcttaccat tttttacctg 003121 cagctttctg tggaaaggct aagctcaatg aagaagtatg tctttgggtt aggctctgct 003181 caggttatac tcatgctatg caaccagtaa agcaatagtt ccatgtggat actccctaac 003241 aaattggagc aattgacagg tgctggctac tacagcagct gttggtatga tagctcaccg 003301 ttttgcagtg ctaccgggac cagcagcaat tgttattggg agtgggttgg ctctgtcctc 003361 aacagctgtt gttttgcagg tacttataac tggcatttat cttgtgtcat agattctgac 003421 attttgatat ttctcatagt caccgtgatc atatcacaat tggaataaat tgatcacctg 003481 gaaacctttt ttttctctgc ttcaaacttt gataccagag tattgtggaa acttcctttc 003541 tacatatata tttgtggtct tcattttttt agttacactg ggtgttgagc acttatggtt 003601 tgcttctcta ggtactacaa gaacgtgggg agagcacatc acgacatgga cgtgctacat 003661 tttctgtgtt attattccag gtatgaccac catgatcatg aatattggtg attatgttcc 003721 aagtttctct tcctcccttt ttttttcttc tgatgcactt ccttatgttt tatcttgagt 003781 tcttgatgac accccaccct gtggttgcat ttatttgaat gtcctttact gttccttgcc 003841 atgcatgtat gcaagcatgg acttagacat acactcatct gcaagcacat gcttatgctt 003901 agggtttatt gtttcctctt cccatatcta ttgccattta caggaaaaaa aatgcattga 003961 cctgactagt gttaatgtaa tctaagtctt tcttctgata gatatttgtt gtgacatact 004021 gttgtatgca ggatttggct gtggtggtcc tgttgatatt aatacctctt atatcaccta 004081 attcttcaaa aggaggggta accttttttg atgccatgtt ctttttccct gtctgagtta 004141 ggacattttt gcttgttggt gcaaaatgat caacgtgttt actacaaatg attcttcgtg 004201 catgaacaat caagtactct acatcactct tgtaacagtc agtataatca tgacatgaac 004261 tgatgagata atctagatgt tttatcctat agcatgatca attgaccaat taaaattgtt 004321 aaatttcttg attggtgata aattttatga atcactttaa aagccatgtt ccattgcatt 004381 gccctttgta ggctatttaa gccagatgat ctatttattg ttctaagtgc tcattctata 004441 tttctgatga cataggttaa attgacagaa atataacata agtaactgtt gtgtaagatc 004501 agctagtgtt atatatgttt attgaaatgt atgcttgaca cttggacaca gccaaagaca 004561 ttaatttagc aagagtttta attgcaatat gaccatggtt gcttctcgca gagtctttcc 004621 ataaccatgt ggtgtcgcaa tgttctcttt ttatcttttt ctttctgttt aaactttctt 004681 acacaatttc tgcttcttat aggttggttt ccaagcaata gcagaagcta tgggaatggc 004741 tgctgtaaaa gcaatagctg ctataacagc cataatcgct ggaggtcgtc tggtgagtcg 004801 gctgttgttt catttagttg gcattcttat ccgttgatga tttttgcatt gactctaagt 004861 ttgactgcca gctaaacacg cacacctaca tgcatgcatg tgtgccactg cacatttata 004921 gcccttgttg cctgtgtgct cattctgctc tctagaattt gattataact gttcgatttg 004981 taagttatcc tttttatgtt gaacagttgc ttcgtccaat ttacaagcaa attgctgaaa 005041 ataggaacgc tgagatattt tcagcaaata ctctccttgt tatttttgga acaagtcttc 005101 tcacagctcg ggtatgtata tttttcttat tatatcccag ccttgcatag ttgcattcct 005161 tgaatctact ttgcatgttg ttttactctc tcatttcagg ctggattgtc gatggcactg 005221 ggagcatttt tggctggtct attgctagca gaaacagaat tctccttaca ggttgagtcg 005281 gatattgctc cttaccgtgg tcttctgtta ggtcttttct ttatgacggt aaggactctg 005341 aatataatca tcattttttt tgtctatgtc aatgagctga taggagtttg cttcaatgtt 005401 tatatggata atataacaat gtacatatcg aatgcaacat tacagacatc gaattatgtt 005461 gatattatct tgctagttca ttagttatga tgccaccgac atatgcaatg aataacttta 005521 cacgcttgtt cactatccaa ctgtttgact tcacatattt gtcaagttgt tatgttttat 005581 ttatttaaat ttttaatggt catgtattgt gtagaacagt attaatggtt ccagtgtcat 005641 atcacttatg tttctgtctt tgattcttat tttagatttt tttttaggtc caacatcgtg 005701 gtttctatta tttactctgg aatgacgata aatcgctaat tcttcctgta agctactatc 005761 ttatttgaag cccttgctta atgcttgcac tgcatttgcc ctttccaggt tggaatgtct 005821 attgacccca agttgcttct gtcaaacttc ccagcaatct ctgtgatatt aggtcttttg 005881 attattggaa agacaatgtt ggttacattt attggtagag tatttggaat ttccaccata 005941 gctgctgttc gggttggtct gttgcttgca cctggtgggg agtttgcttt tgttgccttc 006001 ggagaagctg tcaatcaggt ttggccctgg ttctttctgt ttttttgtat tgttttaggt 006061 gataagatgt atatgtcaca cacatctgag ttaagacaaa ctcatggaca atatttttgc 006121 agggtcttct atctcctcaa ttatcgtcat tattatttct agtggttggc atttcaatgg 006181 ctcttacacc atggttagct gctggtggcc agtttttggc atcaaaattt gagcagcatg 006241 atgtgagaag tttattacct gtggaaagtg aggtatcttc ttttcactct catagaccaa 006301 cccatgtttt accttctgtt tcgatgacct tttttttttt gctgcaatag aggacatttg 006361 caaaaactta gtatttttcc cagtttagtt tgtaatgaac tgtcaagttc acagatttta 006421 acaagaatgc ataattccat gctatgttca attcagctag tataatacaa attttgtcca 006481 tgtagacgga tgacttgcaa gaccatatta taatattggg atttgggcgt gttgggcagg 006541 tttgtaatcc tcataagatt ttatctatct atctatctac tttgctcgat aaatttctac 006601 taatacgcct ttcatatatt tttagataat cgcacaactc ctgtcagaaa gattaattcc 006661 atttgttgca cttgatgttc gaaggtatgg tactgcatct tgcaataacc ttgttaaagg 006721 cagctacaag ataatattga agcatatctc agcattacta ttggctattt atatgtataa 006781 taatcctcgt tctcaagcat gcatataagc tgctatgtgt tcaaacactt tgttatgatt 006841 tatgtctggc tggtgatgcc tacttgtggt tagtggcatg cttgttagac agtgaacatg 006901 tagctggaga taaattctag tagatccaca aaatattaga aaattcagtt aagtgcatgg 006961 aaactaagga agtggtggca aaacctgcag gaaacagatg ttacactttc catttatcgt 007021 tggttagtta cattttggta gattgataag gctggtagct tccctctgaa acaaaagtga 007081 tgtcgtgtgt gatgctattg ccgtaacatt tggttgtcat ctccatctgt cttgggctgc 007141 caagcctgcc acatgtactt gttcaattag tcaatacctc tggttaaacc tattatcttc 007201 aactatttaa ttcttgggca cctttttcac tcagtgatcg ggtggcagtt ggacgcgcgc 007261 ttgacctacc agtatatttc ggggatgcag gaagtagaga ggtagaacaa gttcaactaa 007321 aaattctacc atacaacttg tcaaaaggtg ctgatctcaa tcgatttttg ccaggtactg 007381 cacaaagttg gggctgagag ggcctgcgca gctgctatta ctttagatac ccctggtgca 007441 aattatagag ctgtctgggc tttgagcaaa tattttccaa atgtgaagac attcgtccga 007501 gcgcatgatg tggatcatgg tgttaacttg gagaaagctg gtgcaacagc ggtaagtatg 007561 tgtaacaaag ttgtgtgcaa tgatttcagc agtgtctagg agtctaggtg atgacatact 007621 cctggtgcaa cttgaatgga cattactcca tgtggttcag tgcaagtttt tttttacaca 007681 ttttatttta ttggaaggaa cttttaaaat ccagtaacct gcctattaac atttgcggca 007741 agtagttttt cacaaatata tgaattgaaa tgtttattaa aaccttaaac cttgtggcag 007801 ttagttttgg aacctggtag tacacaccct tagttgtaca gtcatttgca tagaccatta 007861 gaaaaaaaat cttttggtca ctaatgaatt aaatgttgaa catggaaggg ttttaggtgc 007921 tcatttgcca ctcatgggat tacccaagta tctggtcggt gcaattgtaa tatttggtgt 007981 catcatttgg taccgatggt tcttctatac ttgtgggcta gccatttcga tatgatatat 008041 aacctgccat tgtgctgcac tgctgcataa gggcccattc tttgtcttat gcatatcctt 008101 ttgttatata ctgtattcta tcaccgattt aataatacta tctcctaatg gaactacatc 008161 tacttttaag gttgtccctg agaccttgga accaagtctc cagttggctg ctgctgttct 008221 tgcacaggta agcaatgctg ttacagtatt atactgttat gctctttcat caagtgtgga 008281 atttaatgca caaacatcaa tttttcctat tactgtattt caggcaaaac tcccaatgtc 008341 agagattgca gcaactgtca atgagttcag gaaccgtcat ctgtcagagc tcacagaggt 008401 ttgtgactgc attgcaactt agtgatctta gtcataaact cataatgatt tcaataaaat 008461 ccatagagct gtaaaatttt cctatgttta ttgaagacct taatgaagtc ctacgttggt 008521 ctattggtgg atgatttttt attcaggttc aaatgctaac tgctaagttc ttttttctga 008581 cagttatgtg ctacaagtgg aagttctctg ggctacggat actcgagagt catgtccatt 008641 tccaaatcaa agaccgtcac ctctgatgat gagagtgaaa ctgttgatgg agcattggcg 008701 atttgagctg atgcgttagt cacctccctt agactgtaca gtagataatc tgtcatcaaa 008761 gataatttgc gtatagaaaa gtagtagcaa aataattcac gcaatgacga ttcccatttt 008821 tgaaaactta gcattacccc tttttttaat gtatggtagg acataggata ttacttatct 008881 tctaccatca gttcatttat ttgtagccct tttactccgt tagcaagtaa tttcttgatg 008941 gagaactagg acgatgcttg caccttacat ggagaacact gagaatttca caagtggcct 009001 ccaaatggcg catgatggat aagtcgtagt cgtctcttat gaggaatcca tacaaccaag 009061 attttgggtt cagaactaaa tattatgatt ttgttagtac tcagagctga tgttggaaac 009121 aagtggtgtc gggtttcttt tgatattgca ttatattttt |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Barley ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| AV916520 | bags17j03 | 520 |
| more... (Total Hit Count: 11 ) | ||
| Hit Wheat ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| CJ690904 | whrd3f23 | 695 |
| more... (Total Hit Count: 17 ) | ||
