cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK121581     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0580400 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 29,788,397 -  29,790,941  ( - );   2,545(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 29,788,397 -  29,788,636 ( - );   240 (bp)
Exon 2 Location 29,788,763 -  29,788,874 ( - );   112 (bp)
Exon 3 Location 29,788,960 -  29,789,106 ( - );   147 (bp)
Exon 4 Location 29,790,887 -  29,790,941 ( - );   55 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os04g0580400 Os04t0580400-01 216300 J033037C10 21194 LOC_Os04g49130.1 AK121581 16078 AP008210.2 255675107 BAF15561.1 113565218 NC_008397.2 297603645 NM_001060182.1 115460093 NP_001053647.1 115460094
Os04g0580400 Os04t0580400-01 216300 J033037C10 21194 LOC_Os04g49130.2 AK121581 16078 AP008210.2 255675107 BAF15561.1 113565218 NC_008397.2 297603645 NM_001060182.1 115460093 NP_001053647.1 115460094


Chromosome: 4 ,  position: 29,788,397 - 29,790,941 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ggatgggtcc gtcaacctca tggtctggcg atgcatcatc cccggcaaag aaggggtaag 
000061 aaacatcgaa agaagccttt ttttttttgg cacttggctg ttccttgtgc atgctattat 
000121 tcttggctga actagcatgt taattttggt ttgatctata tttagtggtc agttcgattc 
000181 ttgagttgaa tactaagata tgcccacgat cgagtagtct gtaatctgta ctggtttatc 
000241 tagccactcg ggaataggga aatcaccggc atagtgggtt ttggaattgc tgcaagggtt 
000301 ttgcaaccat tgctactatc atgcaaagct gtaaactgat ttatgcccct ctggccctct 
000361 tgtaacgcaa ccgtgtgatt tgatataagt agagtttaca ctttacagga cctggtcctg 
000421 gacgcttgaa tgaatctgca tgctctcttg ctccgttggt tgcttaatgc agtgctatga 
000481 tttgtttaac aatacactgt attctgaata tttctgatgt taccagataa actctaggcc 
000541 atagctatag tgggccattt gtcactttca tttcatttga tttaacttgt ggtgttacat 
000601 caagatctaa gacaaatggc tcggaaatgg ataaatctca ttataacagt tgaaaggttc 
000661 caaattatcc attttgtcac atttaatctc aataggtgtt atctttcgtc tggcagcaga 
000721 cctctgtatc tgaaataaac aagccaaaat ttatctaaag tagtgaaaga actaatcttt 
000781 cttgcaaaat taatgtgcca cgtcatcaaa gaaacaagga ccgttcgatt cttgctctgg 
000841 acgttggtgg tcgttggatc ctctaaattg gcataatatg ttctagaccc ttgaggaaac 
000901 tcatatctat atctagttca tatgaaagca tatacatctt taagtcaggt aactggcact 
000961 tctattggta ctgcttggca acgtttgctc cttgcactat ttggtctgca taatttgttc 
001021 tcaatagacg ttaaacacaa tgaagaagtc aggccttatc atatcaaatg atctgacctg 
001081 atggtaacta tggctcctta tggatgagaa gcattacggg atgaacagta gtccgaacct 
001141 gcaaatctat attgtttctg aatattattg ccctgtggaa tagctgggcc aaaggagttt 
001201 tcctgagcca ttgacatttt taagaaagat tagaaaagtg tcctttcact atttctttta 
001261 aatatactac tcctatttag gatgtttttc ttctgtcaac aatatgataa tagcttactg 
001321 aaaggaaatg acggtatgct acagtaatta gtcttctgcc gtagtttttc cgcaatctct 
001381 acttttactg gttcatagtt caatagttat tgccataaac ttgccaatct gtttcatttc 
001441 acttatgcaa caaccttaac taatgctgga ttgtttccct ctctaaagct ttagcctgtc 
001501 aaggtactgg ttactcctct tattcctcta tgagggcatc aaacactact actttttttt 
001561 cgataccata agagtttgtg caaaataaaa tttcacatac tgatgaattc ttgtcttgtt 
001621 agaacctatt atatgccact gttttgttat cttatgaatt attggcttgt gcatatatat 
001681 agtgtagtct tatgttattc ctctacagca aaatttggta ctctgctcac tctccattga 
001741 tttccaaaat gactctggca tgaaataaga ttatgtttct ataactatcg tgccataaag 
001801 taagattatg tgttaaagtt attttcttcc tacagactga ttgggagggt ggatatttcc 
001861 cacttactat gcaattcact gaagactatc caaccaacgc tccttcttgc aagttcccat 
001921 cgggtttctt ccacatcaat gtctatgact ctggggcagt atgcctatca atcttgagta 
001981 ccgtaagctg aaactgagtg aatatgttct tttcaacatg tatacaccat catattatcc 
002041 tccctgatcc atgatttatt ttttcaggca tggaaacctt caattacagt gaggcaaatt 
002101 cttataggca tccaggaatt gtttgatgat ccaaacccta actctgctgc acagaatata 
002161 agctatgagc tttataggaa ggtttagtta tgacatgcac ttccataaaa atgaaaaaca 
002221 aagtagagac aaaattcctt aactctgaat tggccgtgcg cttaacaaac atgttcttct 
002281 gtcccattgg ctgtcatttg caggacatgg aggagtacag gaaacgcgtt cgtcagcagg 
002341 ctaagaagta tccttcagct ctgtagccgc gcaatgcctg caggattctg gcagctaaaa 
002401 cattttgatt gaacctatca tgaaccgcac ctgtaattcg tggggactaa acccggtgtt 
002461 catcgtctgg tgtattgagt tgccgagttg gcaacatggt gatgtgtctg ttggaactgc 
002521 taaaatacac ttttaagtcc acctc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ472741 baal36k01 585
more... (Total Hit Count: 5 )
/rice/oryzabase