cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK121024     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0497700 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 25,389,135 -  25,390,622  ( + ) ;   1,488(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 25,389,135 -  25,389,888 ( + ) ;   754 (bp)
Exon 2 Location 25,389,983 -  25,390,622 ( + ) ;   640 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os04g0497700 Os04t0497700-01 J023049O11 215743 J023049O11 20927 LOC_Os04g42020.1 AK121024 41698 AP008210.2 255675107 BAF15122.1 113564779 NC_008397.2 297603645 NM_001059743.1 115459215 NP_001053208.1 115459216


Chromosome: 4 ,  position: 25,389,135 - 25,390,622 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 cagcctggtg gggaggggag gtgggtcgcc gaaagcttgg ctgagattcg cctcgcctcg 
000061 ccttctagct cgcggccgcc gctagcgcga gtgagagact gagagtgagt gaggtggtgt 
000121 ggccatggag ggggacgaca agtcggcggt ggtgggaggg gcgtactggg ggctggcggc 
000181 gagggcgtgc gacgcgtgcg gcggggaggc ggcgcggctg ttctgccgcg ccgacgcggc 
000241 gttcctctgc gccgggtgcg acgcgcgggc gcacgggccc gggtcgcgcc acgcgcgggt 
000301 gtggctctgc gaggtctgcg agcacgcgcc cgcggcggtc acgtgcaggg ccgacgccgc 
000361 cgcgctctgc gccgcctgcg acgccgacat ccactccgcc aacccgctcg cgcgccgcca 
000421 cgagcggctc cccgtcgcgc ccttcttcgg cgcgctcgcc gacgcgccca agccgggttc 
000481 cggtgcccac ggcggcgacg cggcggcggc cgacgatgac gggagcaacg acgccgaggc 
000541 cgcgtcgtgg ctcctccccg agcccgacca cgggcagaaa gatggcgccg tcggtgcaac 
000601 cgacgagctc tacgccgact ccgaccctta cctcgacctc gacttcgcgc gctccatgga 
000661 cgacatcaag gccatcggcg tccagaacgg tccgcccgag ctcgacatca ccggcggcaa 
000721 gctcttctac tccgaccact ccatgaacca cagcgtaagc aatcaacccc agagagttct 
000781 tgaatctcga tgagctatat ccagtgagtg tcctgagacg agatggatgc tttgctgaca 
000841 cgacgcaggt atcatcctcg gaggcggcgg tggtgccgga cgcggcggcg ggcggcggcg 
000901 ctccgatgcc ggtggtgagc agggggcggg agcgggaggc gcggctgatg cggtacaggg 
000961 agaagcgcaa gagccggcgg ttcgagaaga ccatccggta cgcgtcccgc aaggcgtacg 
001021 cggagacgcg gccgcgcatc aagggccgct tcgccaagcg caccaagggc ggcgcgggcg 
001081 cggacgccga cgcggacgcc gacgccgacg gcgaggacga ggagatgtac tcctccgccg 
001141 cggccgccgt cgccgcgctc atggcgcccg gcggctccga cgccgactac ggcgtcgacg 
001201 gcgtcgtgcc gaccttctga tcgatcgcaa ccaaagccgc tgtgtacact agcccttctc 
001261 ccccattggg ctgtaatttt gttgcatgca tttcgcgcgc gcgggaaatg ctttctgtag 
001321 cattaatcaa ttgtatgatt attacacgga agtaatccgg acttccaatc tcctcttctc 
001381 tctctctact ctgatccttc catccttgca tgtatattat catcgcgaac tgctgctaat 
001441 ctgcaaattg taattttact aatcagtaat cagtacagtg gtggttgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY836553 baet102d08 418
more... (Total Hit Count: 7 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ897966 whthkles14d22 603
more... (Total Hit Count: 8 )
/rice/oryzabase