cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK112099     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0569100 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 29,099,841 -  29,106,180  ( - );   6,340(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 29,099,841 -  29,100,722 ( - );   882 (bp)
Exon 2 Location 29,101,690 -  29,102,063 ( - );   374 (bp)
Exon 3 Location 29,102,137 -  29,102,314 ( - );   178 (bp)
Exon 4 Location 29,104,009 -  29,104,236 ( - );   228 (bp)
Exon 5 Location 29,104,335 -  29,104,436 ( - );   102 (bp)
Exon 6 Location 29,104,521 -  29,105,228 ( - );   708 (bp)
Exon 7 Location 29,105,346 -  29,105,463 ( - );   118 (bp)
Exon 8 Location 29,105,561 -  29,105,853 ( - );   293 (bp)
Exon 9 Location 29,105,976 -  29,106,180 ( - );   205 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os04g0569100 Os04t0569100-01 107438 002108E06 12944 LOC_Os04g48070.1 AK112099 1656 AP008210.2 255675107 BAF15509.1 113565166 NC_008397.2 297603645 NM_001060130.1 115459989 NP_001053595.1 115459990 Q7Y0V9 ROC4_ORYSJ
Os04g0569100 Os04t0569100-01 107438 002108E06 12944 LOC_Os04g48070.2 AK112099 1656 AP008210.2 255675107 BAF15509.1 113565166 NC_008397.2 297603645 NM_001060130.1 115459989 NP_001053595.1 115459990 Q7Y0V9 ROC4_ORYSJ
Os04g0569100 Os04t0569100-01 107438 002108E06 12944 LOC_Os04g48070.3 AK112099 1656 AP008210.2 255675107 BAF15509.1 113565166 NC_008397.2 297603645 NM_001060130.1 115459989 NP_001053595.1 115459990 Q7Y0V9 ROC4_ORYSJ


Chromosome: 4 ,  position: 29,099,841 - 29,106,180 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcacgcactg ctgctgctgc tcgctctcgc tttgcttccc ctaatcttct cccgggccag 
000061 gggggaagag gggcggaatt cgggcacgag ctttggagtt ggagatcact tcggcgacgg 
000121 cgtggtcccc gccggcatgc agttcccgtt ctccggcgct ggcccgggcg tcttcacgtc 
000181 atcgccggcg ctctccctcg cgctggtacg cgcgccttct tcgctgacgt gttggggggt 
000241 ttttgtttct tttttttttt tggtggtgat acggtcgagt gattcggaaa ggcgcgtctt 
000301 ttctttggtt ggttcggttt gtcgcaggcg gacgcggtgg caggccggaa cagcggcggc 
000361 ggtgggaaga tggttaccgc ggcccatggc ggcgtcggcg gaggaggagg aggaggacgc 
000421 gcgaaggcga gggacgcgtt ggaggtggag aacgagatga gccggtccgg gagcgaccac 
000481 ctcgacgtcg tctcttgcgg cgacgcgggc ggcggcggcg gcgacgacga cgatgacgag 
000541 gacgccgagc acggcaaccc gcccaagcgc aagaagcggt accaccgcca cacgccgcag 
000601 cagatccaag agctggaagc gtaagcgcgc ccccacccac gaacaacgat tcgttgcatt 
000661 ctcctgtgct tggctgcttg ctttggctca tgcatggata ctggctcatc ggtgcaggat 
000721 gttcaaggaa tgcccccacc cagacgagaa gcagcgcgcc gagctgagca agcggctcgg 
000781 cctcgaaccc cggcaggtca agttctggtt ccagaatcgg cgaacgcaga tgaaggtaag 
000841 cgatcgaaac gaacagcaaa ccatctttgc actccgatcg atggtgcagt gcagttcttg 
000901 acactgtgtg tgtgtgtgtc tctctctccc tgtggtgatt gaattggcaa agatgcaact 
000961 ggagcgacac gagaactcgc tgctgaagca ggagaacgat aagctgcggt ccgagaacct 
001021 gtcaatccgg gaggccacga gcaacgcggt gtgcgttggc tgcggcggcc cggcgatgct 
001081 cggggaggtg tccctggagg agcaccacct tcgcgtcgag aacgcgaggc tcaaggacga 
001141 gctcagccga gtgtgcgcgc tcgccgccaa gttccttggc aagtccatct ctgtcatggc 
001201 gccaccgcag atgcatcagc ctcatcctgt gccaggctcg tcgctggagc ttgcggttgg 
001261 gggtatcggt tcgatgccat cagccacgat gcccatctcg acgatcactg attttgctgg 
001321 cgccatgtcc agttcaatgg gcacggtgat cacgcccatg aagtctgagg ctgaaccatc 
001381 ggcaatggct ggcattgaca agtccttgtt cttggagcta gcaatgagtg caatggatga 
001441 gctagtcaag atggctcaga tgggggatcc gctatggatt ccaggtgcct ccgtaccttc 
001501 ctcgccggca aaggagagtc taaacttcga ggagtaccta aacaccttcc caccttgcat 
001561 cggggtgaag cctgaagggt atgtatcaga ggcatctaga gaatctggca ttgtcatcat 
001621 tgacgatggc gccgcgcttg tggagaccct catggatgag gttgtgcttg tgccacctta 
001681 ccccctttca tgtttctgtt gcttgtttgt ttggactcac ctgtagtttg aattcttgcg 
001741 acagcgacgg tggtccgata tgttctcatg catgattgcc aaggcatcaa ccactgagga 
001801 gatttctact ggtgttgctg ggagtagaaa tggtgcattg cttcttgtga gtgatgaaca 
001861 ttctgttgtg gccatcccat gagtttcatg tggttaatca tactagcata acccctgaat 
001921 ggtaaatttc gatcattgca acagatgcag gcagagctac aggtgctttc tcctcttgtg 
001981 cctattagag aggtgaagtt tctcaggttc tccaaacagc tggctgatgg tgtatgggct 
002041 gtagtggacg tttcggctga tgaattgatg agggatcagg gcattacttc tgcatcctcg 
002101 actgcaaaca tgaactgccg aaggctgcct tctggttgtg tgctgcagga cactccaaat 
002161 gggtttgtta aggtactgag actgattatc tttgttagct cctgctcctt agatattctt 
002221 aggtaaatgt cttaaaccgt gatatccttg actagttcac ttcagggtag tatgtggttt 
002281 tacatctatt aattcacact agtcagcatg ctatcggttg acgtgaaact catctacctt 
002341 gcaaagtcgc agctcggtag tacccacgac gctgccacta gaagtctgtc aaaaccagcc 
002401 atattagttg caaagcttgt tagctctact catatgataa tcatacatat ggagagtgct 
002461 ttattagttc aggctctctg caactaacat gacactcatg gaaaagagta ttcgtgtatt 
002521 ctttcgtaat gtttcaaata atgtatgtta gtttaatgtg tcatctggtg atcaccatgc 
002581 aatattttgt tcgtattcac aagtcatggc gtaggctcat gtctcctata gatatgttgt 
002641 ggttatgagt ccataatccg aagtaaagta ttgtattggt cagcggggag gggagtaaat 
002701 aaatgattta ggaatactta agtggttctg agatccaaca cttttcccca agtacgctcc 
002761 cttgcttttg tttagtcctg agttcagttc tcctagggga ttagatactt cttctactcc 
002821 tgggatggtg ccccttgggt aacttcttgt ccgcagttta atcgatgcgt ctcctcgttg 
002881 aaatcttgac tgcttcctct attgttttgt ctcaatgtaa aagtcctctt caccttgggt 
002941 tttgtaccag agttttatat agccttgatc caaattgctc tggggcgcac acatgcacga 
003001 acgattctat tcaaaattct aaattggaca tctgaatggg acaaatatat ctagtctaca 
003061 atggtagaaa catgatttga tgagttataa cgtctcatta ctatagatta cactgtataa 
003121 gttaatctga tgtaaaccca caggttgaaa gcaggaagtg gttctttatt ttaagggttc 
003181 aggaacacaa tattttggaa cactagtggt gtgccattct tggggcatac cataagtcaa 
003241 aataattaac gatgaagata ctgtgatcag aaccatgctt tataaaatgt aaacaaagtc 
003301 aatctcagac agatcagcta atcctagatc aaactagaga tactgtcgtc tctcaagatt 
003361 tctacttttc ttctgtaatt tcatttatgt gcttttggtg cttttacagt atttagttca 
003421 aatatcagta ttttctgaag tctataatct ctctattgat cagtttctgg atctgcctcc 
003481 tgctttcatg gtacttctat ggtttattct atgcaaaaca gaatagacaa atgtgtaact 
003541 attatccatt agtcctatgg cctatggttc tcttacaaag tactagttac aatgctgggg 
003601 ccccactatg ggctaatatt tcgaggtagc ctctatttta aaacattgtg ttgatgtcct 
003661 ttttatgttc cattgattgg gcaaaaagaa attaaaaaaa aacttagatg gaaaaataat 
003721 attaattgta ccattcagct tgtgtagtag ttgcgtactc caggaaaact gcacctcagg 
003781 cctcttttgg tgtattacct ctcaagacat ttgcattttg tgcgtgcatt taagtcctaa 
003841 cagcagatct tgaatggacg ctgtaggtca catgggttga acatacagaa tatgatgagg 
003901 catctgtgca cccgctctac cggcctcttc tccggtctgg tcttgccctt ggtgcagggc 
003961 gatggatcgc gacattacag cggcagtgcg aatgcttggc ccttctcatg tcttctattg 
004021 cattgccaga gaacgactca tcaggtaaag aaattcaata ctactgctaa ctttcaattg 
004081 gatccaccct tctaataaag tgctacattt gcaacagcta tccatcctga aggtaaacgg 
004141 agcatgttga agttggcaag gaggatgacg gacaacttct gtgcaggggt gagcacatca 
004201 tctacccgtg aatggagcaa actggttgga ttgacaggca acattgggga ggatgtgcat 
004261 gtaatggcgc ggaagagtgt ggatgaacct ggaacgccgc caggtgtggt gcttagtgct 
004321 gctacatctg tgtggatgcc tgtgatgcct gaacggctct tcaacttctt gcacaacaag 
004381 gggctgcgtg ctgaatggga tatcctcagc aatggtggcc ctatgcagga ggtgacaagc 
004441 attgccaagg ggcaacagaa tggcaatacc gtatgtctac tgaaggctag tgtgagtatt 
004501 agctaacagt ctgccacagt tctgttcata gcttgctact tactaaacag catcattaac 
004561 tgacttgtgg gggagactgc catttcaaaa ttgttgcaaa cctaaacaca acattttaga 
004621 atttgttggg ggcaccacat cactaaacac tctaaacaat cacatgcttg tctgaaacca 
004681 gtttaatgtg aaataattta gaatttgtga aaagagtacc cttgcttggc catcttaggt 
004741 attttatatt gctaaaagaa aggaaatgaa gccaaggaag tactgcatta gctggtgggg 
004801 aaaggataag aactatgtct attcacaact ggaattttgt gagtcttaat tctgtaacgg 
004861 ttgtaccagt gatgatatag ttgtacaaat acaaaactat atgtttagtc acacatttgg 
004921 caattgccta acaaatacaa ctctactata atatataagc atgtatagaa attccgctag 
004981 gtcaatagag attaatggag gttagaaaga tgctacacat ttccaatcct gcaatctaaa 
005041 tgatgacatc aatgtaagtg cccagatatt ccattaagaa aaagagaaga gtataaggcg 
005101 gaaaaactag tttttgactt atcaaatatt gttgggagtc aataatctgc agaacctaac 
005161 tttacacagt atctgaggaa gggttgctgg tagggccaaa acagaggaac aaatatctac 
005221 tactagaaaa ggtattgtgc ctgacctatt cacagcccaa attttgcagt caaactaact 
005281 tcatacataa caaaggtcta aaatctttaa cggcttcagt gtaatctcgg tcagtcaact 
005341 gtgcctgtgt aggtcactct ggatcatgaa aagcatcact gacagaaatt atcaaatcat 
005401 tttctgtttt gatctctggt agtcttctgt tccccttacc aaaaatttca ctgtgcagcc 
005461 caccaaagac aagcagaaca gcatgctgat cctacaggag acgtgtgcag acgcatccgg 
005521 ttcaatggtt gtgtatgctc ctgtagacat cccagcaatg caccttgtca tgagtggtgg 
005581 ggattcgtca tgcgtcgccc ttcttccatc aggttttgcc atcctgcctg ctgggcctag 
005641 catcggcgca gatcacaaga tgggcggttc attgctcacc gttgcattcc agatacttgc 
005701 caacagccag cccagtgcta agctcacggt ggagtcagtc gagaccgtga gcaaccttat 
005761 ctcctgcacc atcaagaaga tcaagacggc gctgcattgc gacgtgtgaa cccaacaagg 
005821 ggggactttt ggcctagtgg gagcggctgt ggcgatgagc ctgagtcaag aacgaaccgc 
005881 gacataggaa gggacctttg ctaggtggca aggaccggac ggggcaggtc cttagcacag 
005941 agcaatggtg gtggttcggg tattgactca gcctctcccg cctccgttct ctcctgtgac 
006001 tggtgcatgt tgaagtgaac ctgcattttg gacgccatgt agcaggccat ctttctttct 
006061 ttttcctttt tctttttctt tttctttttt tagggagaag ggagtcatct gtgttttttg 
006121 ttggctggct cagggtgttg gtgtttctgg tttctagctt ttgttacagg gagatgtgat 
006181 acattttgta gaagctccga attgtcgtgc tggtatgtga ggttctgatc ataggtctgt 
006241 gtttgatagt ctcgagctat caacgcctgg caaatgcaaa ccttgttatg ctaaaatatg 
006301 ttttagatca atctgattct gaaagctgtt tacatgtccc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ463090 bags25l07 622
more... (Total Hit Count: 4 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ686178 whpc4m04 795
more... (Total Hit Count: 4 )
/rice/oryzabase