cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK111798     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0517100 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 26,342,198 -  26,344,032  ( - );   1,835(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 26,342,198 -  26,344,032 ( - );   1,835 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 UniProt
Accession No		 UniProt Entry
Name
Os04g0517100 Os04t0517100-01 J023105H16 207560 J023105H16 6719 LOC_Os04g43680.1 AK111798 5607 Q7XBH4 MYB4_ORYSJ


Chromosome: 4 ,  position: 26,342,198 - 26,344,032 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 actctgcagc ctcggagcag ccgcctccct tccaagaaca cacaacgcaa gaggagcaga 
000061 gcagttcaga tcagagcagg gaaggagcaa gcacaatggg gagggctccg tgctgcgaga 
000121 agatggggct caagaagggt ccatggacgc cggaggagga caaggtcctc gtcgcccaca 
000181 tccagcgcca cggccacggc aactggcgcg ccctgcccaa gcaagccggt gagtgacagc 
000241 ggctcgtgtt cggttcaggt cgtgtacctt tggcggcgcc ggtgaagcaa agctaaaatg 
000301 ggttttgatg tcgcagggct gctgcgttgc ggcaagagct gccggctccg gtggatcaac 
000361 tacctgcggc cggacatcaa gcggggcaac ttctccaagg aggaggagga caccatcatc 
000421 catctccacg agctgcttgg caacaggtac acacgctgct ctgctcctcc ttaattgcag 
000481 acttatctga tctgatcccc ccaaatttcg ctgctcctgg tttggagcaa tgattgttgc 
000541 ttgcttatgt gcttcaaatg ctatgagagg gaggtttatt ccttttttat ttatttagtt 
000601 attattagtt atttattacc attgtggagg ggcatatact gatatgttat cctcctgggc 
000661 cacctgctct cgatgcaaat agagagaaaa tatattgcta gtcgtaggcc acttttctgt 
000721 agctaattac atcactgatg atgcgcgaga tgtgctaaaa gattccatct tgtttggctc 
000781 ttccggtgac cccccttgaa ttcagcgctg caaaaacatg cgctttgcat taaacaaccg 
000841 catgtgatcc cgacgaggga atcaaatcac gcgatgatag caaagctcta aatcaaaatg 
000901 aagtcatctg aaatagccaa acaatttttt ttttttgaca aaatgaaaca tgaacttggg 
000961 cactgatccg ctctgaattc tgtgctacgc aggtggtccg caattgccgc caggttgccc 
001021 gggaggacgg acaacgagat caagaacgtg tggcacaccc acctcaagaa gcgcctcgat 
001081 gcgccggctc agggcggtca tgtcgcggcg agcggcggca agaagcacaa gaagccgaag 
001141 agcgcgaaga agccagccgc cgccgccgcc gcgccgccgg cgtcgcccga gcggtccgcc 
001201 tcgtcgtcgg tgacggagtc ctcgatggcc tcgtcggtgg cggaggagca cggcaacgcc 
001261 gggatcagct cggcgtccgc gtccgtgtgc gccaaggagg agagctcctt cacctcggct 
001321 tccgaggagt tccagatcga cgacagcttc tggtcggaga cgctgtcgat gccgctggac 
001381 gggtacgacg tgtccatgga gcccggcgac gcgttcgtcg cgccgccatc cgccgacgac 
001441 atggactact ggctcggagt gttcatggag tccggcgaag cgcaagactt gccgcagatc 
001501 tagagaaaga gagagaattt taccgtttct tcggttaatt gatttgtttt ttctctctct 
001561 gccgccatct tgcaccggag ggacatagct aacagacaag agtgtccatg agcgaatcat 
001621 caagcaggaa gaacgcgaat catgcgatgc gatgcgatga gatgcaccca gtagctttga 
001681 tagttaattt tcttttttta cctccttcct gtatgtatag aaacagaaga gatcagtgat 
001741 cgaaacctga gatcctttct cacaatgtgc aaactggatc atcagaaaac gggctctgcg 
001801 tttctcattt gattaattaa attcaacttg cacgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY845461 bart20g03 580
more... (Total Hit Count: 11 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ305979 whyd24j12 330
more... (Total Hit Count: 15 )
/rice/oryzabase