cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK110545     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0472200 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 24,098,688 -  24,099,853  ( - );   1,166(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 24,098,688 -  24,099,853 ( - );   1,166 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os04g0472200 Os04t0472200-01 002168B08 113399 002168B08 19642 LOC_Os04g39600.1 AK110545 40398 AP008210.2 255675107 BAF14973.2 255675542 NC_008397.2 297603645 NM_001059594.1 115458917 NP_001053059.2 297602890


Chromosome: 4 ,  position: 24,098,688 - 24,099,853 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ctcactcagg tggtgcagtt gctggcgttg cacacgacta cgtaatacgt aggcgagatt 
000061 tctgcagcga cgatggagct gaaatccgcc gtgctcgccg tcgcggcgct gtgcctcgcg 
000121 ctcgcgctcc tgctcccgcg cgtcgcgctg tcacagaggc tagctacagc ggacgccccc 
000181 gcgccggcgc cggcgccgcg ccacgtcgac ctcgccgagc tgctctccct cgccgggccg 
000241 tacggcacgt tcctgggcta cctcaccaag acgggcgtga tcacgacgtt ccagagccag 
000301 gccaacgaca ccgccgccgg cgcccccggc gtcaccgtgt tcgcccccga ggactcggcg 
000361 ttcgcggccg tcggcggcgg cgccgcgctg tccaacctca ccgccgacca gctccgcacg 
000421 ctcatgctgt gccacggggt gccccggtac cacccgctct cgtcgttctc ggcgctggcc 
000481 gcgtcgggcc cggcgcccac gttcgccggc gggcagcagt acgccgtgaa cgtcactgac 
000541 gccgccggga cggtccgcat ccagtccggc tgggccaccg cgaagctcgt cagcagcgtg 
000601 tactcgacgt cgcccgtggc ggtgtacgcg ctgaacaggg tgctgctgcc ggagcagatc 
000661 ttcccgaccg cccctaaggt cgcacccgtg ccggccccgg ccccggcgcc ggtgcacggg 
000721 gacaaggcga acgacggcgc accgggcgca ggcgagcttg gcgcctcgga cgtcaagagt 
000781 tcgtcgtgcc gggttggcgc cgggcgcctt ctcgccatct tggctgtaat ggtatccagt 
000841 ttttctgatg atatagtggt gtgatttttt tttttttggc gtgggtacat atatacagta 
000901 cttccctcgt ttcataatgt aatactttct accattaacc acattcattt agatgttaat 
000961 gaatctagac atatgcatgt atttagattc attaacattt atatgtatgt gggcaatggt 
001021 aaaaagtctt acattgtgaa acggagggag taatgtttat gttttttgtc aattcgtttg 
001081 tcgcatctct gtatgtaaac attcattttg catgaacata tctgcaaata acattttctg 
001141 gcagtttaaa cgaaataaga ttctac

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY844641 bart09e10 483
more... (Total Hit Count: 7 )
/rice/oryzabase