cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK108237     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os04g0624500 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 4
RAP - Location, Length 32248327 -  32250790  ( + ) ;   2464(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 32248327 -  32248947 ( + ) ;   621 (bp)
Exon 2 Location 32249429 -  32249687 ( + ) ;   259 (bp)
Exon 3 Location 32249797 -  32250790 ( + ) ;   994 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os04g0624500 Os04t0624500-01 002140G09 111090 002140G09 17717 LOC_Os04g53300.1 AK108237 38073 AP008210.2 255675107 BAF15846.1 113565503 NC_008397.2 297603645 NM_001060467.1 115460663 NP_001053932.1 115460664


Chromosome: 4 ,  position: 32,248,327 - 32,250,790 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 acagcgcagt gccgccatgg agagcatcaa cgtagcacca ggaacaaccg ctacgcctcg 
000061 catggcgccg ccgccgccgc cgccgtgcat caccaacctc cagagtaccc ttcgctacaa 
000121 caacctgctc ttgcaccgca agacgaaggg gtggaagccg cggaacgtgt cctgcagggt 
000181 cgaccgccgc gacgtgctcc tcggcatcag cggcgcggcc gccatggtgg ccacgcaggg 
000241 cggcggcggc gcgctcgcgg cgcccatcca ggccccggac ctcggcgact gccaccagcc 
000301 cgtggacgtc cccgccacgg cgccggcgat caactgctgc ccgacgtaca gcgccggcac 
000361 cgtcgccgtc gacttcgcgc cgccgccggc gtcctcgccg ctccgcgtgc ggccggcggc 
000421 tcacctggcg gacagggcgt acctggccaa gtacgagagg gccgtgtcgc tcatgaagaa 
000481 gctccccgcc gacgaccccc gcagcttcga gcagcagtgg cgcgtccact gcgcctactg 
000541 cgacggcgcg tacgaccagg tcggcttccc cggcttggag atccagatac acagctgctg 
000601 gctcttcttc ccatggcaca ggtacgtgac attgtgacaa catggctgca tcacgttcac 
000661 gtctcgcgtt gttcgtgtac agttgcatgc atgatatata tggggagtgg attttttacg 
000721 acttcctctt attttgtaca tgtcattcaa aaagttatca aaaaatttaa aaaatttgtc 
000781 aagatagatc aatatacggt atatcttttt cgcaaacata cgagttaaaa ttcgacttat 
000841 acaattcgaa acaaaaacaa caaatttgac cgtgatttac gcagttaaat ttgttatttt 
000901 tgtttctact tgtataagtt gaatttgaat ttgtatgttt gtgaaataac atattatata 
000961 ttgatgtaat attgatctat actgctatat ttttttaatt tttttgatga ctttttactt 
001021 gacatgtaaa aatgagagga ttatttgagt ggctcatgag attctgtgaa cgctggacgc 
001081 atgcgtgtga acgtacgtgc aggatgtacc tgtacttcca tgagaggata ctgggcaagc 
001141 tgatcggcga cgagacgttc gcgctgccgt tctggaactg ggacgcgccg gacggcatgt 
001201 cgttccccgc gatgtacgcc aacaggtggt cgccgctgta cgacccgcgg cgcaaccagg 
001261 ctcacctgcc accgttcccg ctcgacctcg actacagtgg aaccgacacg aacatcccga 
001321 aagaccagct gatcgatcag aacctcaaca tcatgtaccg ccaggccagt aatcacatac 
001381 aaattttgat ataaataata atagatgaca aaaactccaa attaatcgac ttatgagtta 
001441 agattggacg aacaaaattt tatgatgttt cagatgattt cgggagctag gaaggcggag 
001501 ctgttcatgg ggcagccgta ccgcgccggc gaccagccgg agccgggggc gggcaccgtc 
001561 gagagcgtgc cgcacaaccc cgtccacaga tggaccggcg acccgaggca gccgaacggc 
001621 gaggacatgg gcatcttcta ctcggcggcg cgcgacccgg tgttcttcgc gcaccacggc 
001681 aacgtcgacc gcatgtggca catccgccgc ggcctcctct tccccggcga caccgacttc 
001741 accgaccccg actggctcga cgccagcttc ttcttctacg acgaggaggc ccgcctcgtc 
001801 cgcgtccgcg tccgcgacac cctcgacccg tcggcgctgc gcttcacgta ccaggacgtg 
001861 ggtctcccgt ggctgaacgc caagccgtcc acgggagcag ccagcacgcc ggcgcccgcg 
001921 gccggcgcgt tcccggcgac cctggacaag accgtgcggg tggccgtgac gaggcccagg 
001981 gcgtcgagga gccgcgagga gaaggaggag gaggaggagg tcgagatccc cgaccactcc 
002041 acgtacgtca agttcgacgt gttcgtgaac gcgcccgaga gcggggacgg cgcggcgacg 
002101 tgcgcggcga cgtgcgccgg cagcgtcgcg ctggcgccgc acgggatcca ccgcgagggg 
002161 cagctgtcgc cgaggaagac ggaggcgagg ttcggcatat gcgacttgct ggacgacatc 
002221 ggcgccgacg gcgacaagac gatcgtcgtg tcgatcgtgc cgaggtgtgg ctgcgattcg 
002281 gtcaccgtcg ccggcgtcag catcggctac gctaagtgaa gcacaacgtg aaccgtggac 
002341 gtatatttat catctataca tgtgaaccca gatggagaga cggatttgtg tttgatatgt 
002401 gtgtgactaa tgattgtata caaaataatg ccagtaatat aatgagcatg gatgatattg 
002461 gctt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ906706 whthkles4g22 498
more... (Total Hit Count: 2 )
/rice/oryzabase