cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK106426     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0524300 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 26,726,381 -  26,727,600  ( + ) ;   1,220(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 26,726,381 -  26,726,576 ( + ) ;   196 (bp)
Exon 2 Location 26,726,654 -  26,726,700 ( + ) ;   47 (bp)
Exon 3 Location 26,726,803 -  26,726,880 ( + ) ;   78 (bp)
Exon 4 Location 26,726,992 -  26,727,062 ( + ) ;   71 (bp)
Exon 5 Location 26,727,152 -  26,727,600 ( + ) ;   449 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os04g0524300 Os04t0524300-01 109276 002103B09 16268 LOC_Os04g44280.1 AK106426 4495 AP008210.2 255675107 BAF15262.1 113564919 NC_008397.2 297603645 NM_001059883.1 115459495 NP_001053348.1 115459496


Chromosome: 4 ,  position: 26,726,381 - 26,727,600 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acggtcacac acagaattcc taaagccgac ttggcttttg ctcgcgagta ggactgtagg 
000061 agagatatcg atctgatggc cacctgcagg agccgtggcg tcgagagggg cggcgcgccg 
000121 cacgtcctcg cggtggacga cagctccgtg gaccgcgccg tcatctccgg catcctccgg 
000181 agctctcagt tccgcggtga gctgctggct ctcttgctcc tgtaccacat attgtccatc 
000241 ctcgttcttc ttcttacgtg tgcatgtgtg tagtgacggc tgtggacagc gggaagaggg 
000301 cattggagct gctaggctcg gtgagtctcc ggcatcctct gcctttttgc tgttggttac 
000361 gcaaatgtgg aggtgtgttt tgcctgcgag gccgtaaacg tttttttttc tttggctcgc 
000421 aggaaccgaa tgtgagcatg attatcactg actactggat gccggagatg accgggtatg 
000481 aactcctgaa gaaggtcaag gtaatccggt gatatcacca ccgttatttg ggccaacttc 
000541 catagtactc ctcgtgcata ttactactca ccttttctga tttgacaata gaaaatggca 
000601 tatctttgca ggagtcgtcc aggctgaagg agatccctgt ggtgatcatg tcctcggaga 
000661 acgtctctac aaggatcaac aggtttgtgt gcacagtatc ggtgcccata tctgcccaaa 
000721 tactatcaag atatactcat cttcttgaca cgtttttggt taatttgcca ggtgcttgga 
000781 ggaaggagcg gaggatttct tgctgaagcc cgtgcagccg tcggacgtgt cgcggctgtg 
000841 cagccgcgtc ctccggtgag ccgtgcaggc ggcggccggt cgggtgggcg tcgtgggcga 
000901 ctgaagcgtc cctgcatgca tatgcggctt cagtgttttg ggggttggaa ttaatagcag 
000961 cagaagcaga agcagtagta gtagtgatta gtggtagcca aacgcactgt gcgcttgcag 
001021 atgttgtggt taatgggctg aatttgcctc tccctttctc tatttttctc attccgaatg 
001081 tcatgttcta gctgttccct gtgtcgatct agaatgcagt ttgtcccatc ggtttgtcca 
001141 tcccagttga aaaacctgtt gcaacaaatg tctcaatttt atgttcttaa cagttcatcc 
001201 gttttactag ttatattcat

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AK252721 FLbaf164b16 1570 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ224206 whdl8n01 543
more... (Total Hit Count: 4 )
/rice/oryzabase