cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK106153     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0401000 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 20058020 -  20059698  ( - );   1679(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 20058020 -  20058378 ( - );   359 (bp)
Exon 2 Location 20058547 -  20059031 ( - );   485 (bp)
Exon 3 Location 20059168 -  20059249 ( - );   82 (bp)
Exon 4 Location 20059618 -  20059698 ( - );   81 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os04g0401000 Os04t0401000-02 109003 001208A01 10680 LOC_Os04g32850.1 AK106153 42248 AP008210.2 255675107 BAF14599.1 113564256 NC_008397.2 297603645 NM_001059220.1 115458169 NP_001052685.1 115458170
Os04g0401000 Os04t0401000-02 109003 001208A01 10680 LOC_Os04g32850.2 AK106153 42248 AP008210.2 255675107 BAF14599.1 113564256 NC_008397.2 297603645 NM_001059220.1 115458169 NP_001052685.1 115458170
Os04g0401000 Os04t0401000-02 109003 001208A01 10680 LOC_Os04g32850.3 AK106153 42248 AP008210.2 255675107 BAF14599.1 113564256 NC_008397.2 297603645 NM_001059220.1 115458169 NP_001052685.1 115458170


Chromosome: 4 ,  position: 20,058,020 - 20,059,698 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atgcatcgcc tccattattc atgcttcgat tctccatgct ttcctctact gctcattggt 
000061 aacattcggc aaatttgaca ggtgagctca gtattttaaa tcttaatgta gtactttggt 
000121 gtgctaatct ttgctctgtt caaaagagaa ttctggtttc tttgctattt tgaaaagaga 
000181 attttcgtta caggacttca acttccataa tacttttttt tataattaag gcatgatata 
000241 tatcttcttt ctgaattcca cgggaattgc actttttcct gagaaatttg taaagagcat 
000301 gcctgttaat tgcaaggggc ccctaactct gttatgagaa aagagaacta tataagatgc 
000361 tcaataagca cctctttttt tttttctgtt aactgaccaa agcctgtcta tctgcatttt 
000421 tttttgtttt ttgtttttct tgtgtgcaga tgggtatatt ggtcatcttg gtggacctgc 
000481 aatgctgccg ctgcgatgcc aagatcagga aggtcctggg ctgccttgaa ggtataataa 
000541 attctgcccg aatcgtccat gtttgattga attttcaagg ctaatcagca gtgttcctgc 
000601 tcaattggga gcaaaacctc tgttaaaaag ggtgtgtttg aatgaatata attgaatatg 
000661 aacgcagagg agtactgcat cgagaaggtg gagtacgacg tgaagaacaa cagggtgatc 
000721 gtgcgcggga agttcgaccc ggagaagctg tgcaagaaga tctggtgcaa ggccggcaag 
000781 atcatcaagg agatcctcat cgtcgacgtc tggccgccgc cgctgccgca gccgccgccg 
000841 ccgtgcaagc cgccgccgtg cgagaagcct ccggaggact gcaagcccaa gccctgccat 
000901 tgctgcagct gcgagaagcc caagcccaag cccaagccct gccactgcga gaagcccaag 
000961 ccctgtcact gcgagaagcc caagccatgc gagaagccgc cgccgtgcaa gccggaggag 
001021 ccgccgaagc cgccgccgga gaagccgccg ccgaagccgg agtgcaagct ggtgccgtac 
001081 ccttacccgg tgccgtaccc gtacgccggg cagtggtgct gcccaaagcc tgagccgccg 
001141 aagccgccgc cggagccacc gaaggagccg gagccgccga agccgtgcgg gtgctcgcac 
001201 gccttcgtgt gcgtctgcaa gccggcgccg ccgccgccgc cgccgtgcgg gtgctcgggg 
001261 ggccacggga actgcggctg cggcatcagg ccgtggccgc cgcaggtgtg gccgccgccg 
001321 cccgtctgcc cgccgccgcc gtggtgctac accgaggaca acgccaacgc ctgctccatc 
001381 atgtgatggc cggccggcgg tcggcgtcga tcacgatcat ctctgctgct taatttcctt 
001441 gcttgctact acctctgctc ctttccttgc ctcggaaatc ggaataaatt aaacacgagg 
001501 ctgatcgatg tgtttgtaat taatccatgg tgtttgtgtt gtgtgctgtg tgggctgtat 
001561 aataattaat tacagtatgt tcatgtaaat ttgtttgttt gtttgtttat gttgttcgat 
001621 atgtataatt atgtacaata attaatcgtg gagaggctca ctaaactcat aaactgtag

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Wheat ESTs  
Acc. No. Clone Name Length
CJ716974 whvd14f02 820 view details
/rice/oryzabase