cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK104626     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0460600 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 23,493,707 -  23,495,746  ( + ) ;   2,040(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 23,493,707 -  23,493,754 ( + ) ;   48 (bp)
Exon 2 Location 23,494,139 -  23,494,369 ( + ) ;   231 (bp)
Exon 3 Location 23,494,504 -  23,494,799 ( + ) ;   296 (bp)
Exon 4 Location 23,494,921 -  23,495,746 ( + ) ;   826 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
RNA Nucleotide
Accession No
RNA
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os04g0460600 Os04t0460600-02 104136 006310B03 6131 LOC_Os04g38720.1 AK104626 22013 AK104626.1 32989835 BAG96845.1 215737715 NC_008397.2 297603645 NM_001059527.1 115458783 NP_001052992.1 115458784


Chromosome: 4 ,  position: 23,493,707 - 23,495,746 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 atacaacgat ttcctcttgt caccctgaat ctacttctgc tgcaaaaggt aattagcata 
000061 tcctaactat ttatcacctc atccctcaag tgtgttcttc tactttctta gatgtacttt 
000121 ttaaactttt ctgtgcataa acatctcatg tgctgattct ttttgtgtgt tctatgtgct 
000181 tgcataccat gtccgtttgg ttcgattcga ttttttaagc atccgtgtgg tttgtttttg 
000241 ttctagctta gctagctagc tagcaaagag gtgtcatgga tacataccag ctttaatttg 
000301 atttggtttg ctctaccttt aaaagtgtgt gaatcatctc cggtcctagt ttatgcatat 
000361 ctgtgtgcat atgtacaaat gtttcaggac aggagttggc ataacagcta acaaatctta 
000421 catatatagc agcaataagc aaggagcagt tagccaggta aagctctagc tagctagctt 
000481 aggcagcaat ggagcagcat cagggccagg caggcatgga cttgccccct ggcttccgct 
000541 tccacccgac cgacgaggag ctgatcacgc actacctcgc caagaaggtc gccgacgccc 
000601 gcttcgccgc cctcgccgtc gccgaggccg acctcaacaa gtgcgagccc tgggacctgc 
000661 catgtaagca acctctcctc tacttaatta cctctgcaat ctgcatgcag tgatgaactg 
000721 atgattgata tatacatgga tcattggatt ggctagctag ctaacatctg ttgatgctgc 
000781 gatggaatta ttggcagctc tggcgaagat gggggagaag gagtggtact tcttctgcct 
000841 caaggacagg aagtacccga cggggctgag gacgaacagg gcgacggagt ccgggtactg 
000901 gaaggccacg gggaaggaca aggacatctt cagacggaag gccctcgtcg gcatgaagaa 
000961 gacgctcgtt ttctacacgg ggcgcgctcc caagggggag aagtctggct gggtcatgca 
001021 cgagtaccgc ctccacggca agctccacgc cgccgccctc ggcttcctcc acggcaagcc 
001081 cgcgtcgtcc aaggtacacg aacgcacgta cgccgcgtgc gtgtgtttgg ttgtgaccag 
001141 tttgatcgat cgatcgatcg atcgattgag caggccggac tgacacgccg tgggtttttc 
001201 ttgttggtgc gtagaacgag tgggtgttgt gcagggtgtt caagaagagc ctcgtggagg 
001261 tgggcgcggc gggagggaag aaggcggccg tggtgacgat ggagatggcg aggggagggt 
001321 cgacgtcgtc gtccgtggcg gacgagatcg ccatgtcgtc cgtcgtcctc cctccgctga 
001381 tggacatgtc cggagccggc gccggcgccg tcgacccggc gacgacggcg cacgtgacct 
001441 gcttctccaa cgcgctggag ggccagttct ttaacccgac ggcagtacac gggcacggcg 
001501 gcggcgactc ctcgccgttc atggcgagct tcacgcagta cgggcagctg caccacggcg 
001561 tgagcctggt gcaactcctg gagagctgca acggctacgg cggcctcgtc gacatggcag 
001621 cgtccggcag ccagctgcag ccggcggcgt gcggcggcga gcgggagagg cttagcgcgt 
001681 cgcaggacac cggcctcacc tccgacgtga acccggagat ctcgtcatcc tccggccaaa 
001741 aattcgacca cgaggccgcg ctatggggct actaaggttt gatatgatca gcgccgtgta 
001801 cgttaatcgc gggcgattag cgaagtagcg attactgtaa ataaaaccat gagatcgcga 
001861 tcgaggcatc taccaaggtt cgcttaattt gcttgtacct ataggtgtag attatttggt 
001921 gatttgggag atgtaattag cattgtttgt ttgtaattcg tatcagaatg atcgatgcag 
001981 tattgtttgg agggttagtt aagcaattgg ccactcctca gttgccagtt aattagttag 

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV836291 basd3m15 562
more... (Total Hit Count: 3 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ287471 rwhr20e07 540
more... (Total Hit Count: 4 )
/rice/oryzabase