cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK103713     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0376500 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 18,624,078 -  18,628,506  ( - );   4,429(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 18,624,078 -  18,624,296 ( - );   219 (bp)
Exon 2 Location 18,624,671 -  18,624,823 ( - );   153 (bp)
Exon 3 Location 18,624,991 -  18,625,058 ( - );   68 (bp)
Exon 4 Location 18,625,150 -  18,625,251 ( - );   102 (bp)
Exon 5 Location 18,625,346 -  18,625,417 ( - );   72 (bp)
Exon 6 Location 18,625,494 -  18,625,542 ( - );   49 (bp)
Exon 7 Location 18,625,622 -  18,625,755 ( - );   134 (bp)
Exon 8 Location 18,626,139 -  18,626,205 ( - );   67 (bp)
Exon 9 Location 18,627,122 -  18,627,225 ( - );   104 (bp)
Exon 10 Location 18,627,328 -  18,627,444 ( - );   117 (bp)
Exon 11 Location 18,628,189 -  18,628,298 ( - );   110 (bp)
Exon 12 Location 18,628,414 -  18,628,506 ( - );   93 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os04g0376500 Os04t0376500-01 214568 J033137H02 9211 LOC_Os04g30780.1 AK103713 14170 AP008210.2 255675107 BAF14496.1 113564153 NC_008397.2 297603645 NM_001059117.1 115457963 NP_001052582.1 115457964
Os04g0376500 Os04t0376500-01 214568 J033137H02 9211 LOC_Os04g30780.2 AK103713 14170 AP008210.2 255675107 BAF14496.1 113564153 NC_008397.2 297603645 NM_001059117.1 115457963 NP_001052582.1 115457964


Chromosome: 4 ,  position: 18,624,078 - 18,628,506 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gacctaaacc ctagctcgcc tcctcctcct cctcctcgcc gccgccgccg ccgccgtcgc 
000061 cgtcgagcac cacccgagca gccatggcga atcgtaagcg agacgaagaa ccgccctacc 
000121 ctctccctct cttgtgtcct gctccgcttc cgactctggg ggcgaatggg tggtttgttt 
000181 aattggttcg gtttggtttg gtttgcagcg gcagcagcag cagggccgtc ggggggagcg 
000241 aggtcgttcc tgcaggccgt gtcgaccgtc accgaggagg cgccgtcgcc gctccgcgtc 
000301 gtgcagatgg agggcctggt gattattttt cttctcccct cccgttttgt cccttggtag 
000361 aattcgaagc gcgtccgcta tgctagcatg tttgttttgg gcgacttgcg cttgggatga 
000421 agtaaggata agctcttgat ttcgggagga tctgtttgtg tgatgaaacg cccgcagtgt 
000481 gcgatttctc ttcacccaaa tgtgttgttt agctctttag atcgaggtaa ttacatgctt 
000541 tgccgtgtaa ttagatcggg gtcctttggc tctggaactg gagggatttg gtgaggttat 
000601 tacgaatata gttgtccctt ttacaatgtt ttcttctaca catgatttga aagtgatcgg 
000661 aagacttcct atcttaatta attacattga atgacctcct tcggtcattc cggcaaaaaa 
000721 gaaagtgatc atctgcattg tgattgttga gaagaagtgt aggagaaact agggagagca 
000781 gagggtggga gaaaattctt gcttgattcg cagcgcaata ggagcctcca agagtgctct 
000841 agtggagcac aaccatattg cacgacacac atgttgcttt tagtcatgta cttatgttga 
000901 ccatactcta ctagatcaaa tttgctgcac ctttacattg gatgattttc tgagggccag 
000961 ccgcattttt cttttgccct gtgtttgaat aggcatgttt aggtatagta ctcttatatt 
001021 tccactcaca aatttctctc tctctctctc tcaatcatgc aggctgtcct gaagatcatt 
001081 aagcactgtg aggagtttgc acctgctcta gttacaggcc aactgcttgg tttggatgtt 
001141 ggcagtgttc tggaagtaac gaactgtttt cctttcccag tgagtattta acatctataa 
001201 catatttctt ttaatatgac ttgagtattc ttgtggttgt ttagtttata gattaacagc 
001261 tactttaata tttgaccaca gatgagagaa gatgatgaag aggcagatgc agatggtgca 
001321 aattatcagc ttgagatgat gaggtgcttg agggaggtta atgttgacaa taacactgtt 
001381 ggatggtatg ataagacatt tcattcaata cctattgctg ttgttccata tgataattaa 
001441 cctctgccgc gtgcttctgc gagcagcctt tgagtttaca cgtgttacaa ctctgttttt 
001501 gtagtctttg atcctctgcc tttaatttat atgtgcataa atagttcatt cgtatttctt 
001561 tgttctgacc gtttgttcat tattatattt ttggaatgtt gctaacatct ttggctgtag 
001621 ttaataatgc aggcaaacta aattgagata tgctcatttg tcaacatagt ttagtgatgc 
001681 tgttgagtat gtgacactga aaagtgagaa caaaataaat gtggaatttt gcctctatgc 
001741 atacatgtat agaaatgttg tttgtgtcat gtattcacct tgtctctgtt taaaatcaat 
001801 ggtgctctgc ttgtttgctt ggactgatta ttttatctaa tcctcttttg gaaacacttc 
001861 atgagagtgt taaatttctt attgcatgaa gcaaccaaac atcatcaagc ttctggtagc 
001921 aacctttagt tatcgtgtat gtggttaaca ttgaccttaa agtggctggt tttgtgctta 
001981 ctcgatgtat tttccagtct tttgcagttg cattaacgac atattaacct gtgttgcatt 
002041 ctagctgttt catgcctcgt tcaaaatatt tgctatattt ttaactccaa taatgactaa 
002101 ttatccaacg tatttcatct tgagcttaag tgatgtgtcc tattatttgt attatttatg 
002161 ttgtggtttt aagttttaac ctccattctt gttgtacttg tttaacagat tttgcacata 
002221 caactatcat aatcatccaa caaagctgta gcctgttctg cttcatgttt tgaccctttt 
002281 ttttcccatg cctgtgtaca ggtatcaatc ttgcttgctt ggatcttttc agactgtgga 
002341 actgattgaa acgtttatga actatcaggt atgcaaaaat aaataaggtg caattgatca 
002401 atctttccat tgctgttggg ttatcctctc ccagctttgt tgacctactg cagtaatagt 
002461 tttaggccaa cttgcgcatt aattagctca aaatagctag cacagcatga acaaacaaat 
002521 aggacagcaa acagtgcacc taattagctt ctctaattag catgtaacct attttgacac 
002581 gaatcaaggt taagtctctg tatgcattac aatatctaac ctgtttgtac atccaatgta 
002641 gtatacgcag cagtacatgc atatcatata tcaaatatct atgagttggt cataagagtt 
002701 gcgtaatttt ctgcgatgtt gcatgcagaa cataacattt gcatgttaca ggagaatatc 
002761 cggagatgtg tgtgcatcgt ttatgaccca tctaggtcaa atcagggggt tctagctctc 
002821 aaggccttga aactcacaga ttcattcatg gatctttacc gtaacaatgg tttaactgga 
002881 gagaagtacg gtttctttta tgtaacccag tccttctaat agtttttaaa gattgcatat 
002941 gcaaatgact acatgttttt acaggttaag agagaagaaa ttgtcatggg ttgatatttt 
003001 tgaggagata ccggtatgta cttagttatc tttcatgtca atatgtacaa tttttgtgtc 
003061 ctgatgtatc ctgtcttatt gtctcataga ttaaagtttc caactctgca cttgtcagtg 
003121 ccttcatgac ggagctggaa cctgaatcac ctgtttcaca ggtttagagt taacttgtga 
003181 atttttttta tgtggcatct gttgtcatca tcctttagca gctacctagg atttatattt 
003241 atcttcttgt tacagtgtga ttttgaccgc cttaaattgt caactgctcc attcatggaa 
003301 aggaacttgg aatttctgat tggctgcatg gatgatcttt catcagagca gaacaaggtt 
003361 attttttgaa atgaactttt gcataaacta tctgatgtta ctgtgacaaa tatattttat 
003421 atgactgggt gttgtccttc tggtgtagtt ccaatattac tatcgcaatg tctcaagaca 
003481 gcagtcacag cagcaggcat ggctccaaaa gagaaggtca aaacaactgc ttgtccattg 
003541 tgatattgat cagttcatta gctcttggaa tgtgccaact ttttaaacaa gcgcactctt 
003601 cctctcggaa ataagcaaag caggtgctgc tatgaatatg gcaatttacg tctcatattt 
003661 tttttgctac tgacatgctg caggcaagag aatatggcaa gaaaagctgc tggagaggag 
003721 ccattgccag aagaagaccc atccaatccc attttcaagc cgattcctga gccgtcacgt 
003781 ttggagggtt atcttgtaac caatcagatc tccagttact gcaaccatat taatgggtat 
003841 ggattctcgc aagtttatgc ctattctcta ggagttccat aatgcctgtg tcttttcgtc 
003901 aggaatgaac cattagatgt agaaatttta ctgtgattat tatggtcgta cagatgcatg 
003961 tctcatgatt gaactagtaa catgcaaaag tattaaatat acaatgttgt tagcatgtag 
004021 tggtgtagtc tgatacacaa aatgttcctt tttgaatgat ccatttaatt atggcaatgg 
004081 ttacggtgaa gtaaatatgg caaaatttct cttctggctc ttgtttccgt cgtaaagctt 
004141 cagatgtttt tttttttcat tccatggcgc ttattcacca gccatattga tatttgcgtt 
004201 actactgcag ggttgctggt cagaatttca acaggctcta cttaatgaag gccttgcagg 
004261 aggactagat ggctaggtga tgagtggcaa ctgttatgat atttgacttg ctagatgtca 
004321 attttgcctt gtgctttatg cctattatac cttttgccaa gaaaagccag agcctattgt 
004381 accaatctta cggatacaaa gtccgcagta tgataaattg attttatcg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK252055 FLbaf140j05 1260
more... (Total Hit Count: 17 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ519056 rwhcs13e10 903
more... (Total Hit Count: 64 )
/rice/oryzabase